Literature DB >> 17517653

A genome-wide RNA interference screen identifies putative chromatin regulators essential for E2F repression.

Jianrong Lu1, Marie-Laure Ruhf, Norbert Perrimon, Philip Leder.   

Abstract

Regulation of chromatin structure is critical in many fundamental cellular processes. Previous studies have suggested that the Rb tumor suppressor may recruit multiple chromatin regulatory proteins to repress E2F, a key regulator of cell proliferation and differentiation. Taking advantage of the evolutionary conservation of the E2F pathway, we have conducted a genome-wide RNAi screen in cultured Drosophila cells for genes required for repression of E2F activity. Among the genes identified are components of the putative Domino chromatin remodeling complex, as well as the Polycomb Group (PcG) protein-like fly tumor suppressor, L3mbt, and the related CG16975/dSfmbt. These factors are recruited to E2F-responsive promoters through physical association with E2F and are required for repression of endogenous E2F target genes. Surprisingly, their inhibitory activities on E2F appear to be independent of Rb. In Drosophila, domino mutation enhances cell proliferation induced by E2F overexpression and suppresses a loss-of-function cyclin E mutation. These findings suggest that potential chromatin regulation mediated by Domino and PcG-like factors plays an important role in controlling E2F activity and cell growth.

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Year:  2007        PMID: 17517653      PMCID: PMC1890503          DOI: 10.1073/pnas.0610279104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Analysis of promoter binding by the E2F and pRB families in vivo: distinct E2F proteins mediate activation and repression.

Authors:  Y Takahashi; J B Rayman; B D Dynlacht
Journal:  Genes Dev       Date:  2000-04-01       Impact factor: 11.361

Review 2.  Sibling rivalry in the E2F family.

Authors:  Jeffrey M Trimarchi; Jacqueline A Lees
Journal:  Nat Rev Mol Cell Biol       Date:  2002-01       Impact factor: 94.444

3.  A complex with chromatin modifiers that occupies E2F- and Myc-responsive genes in G0 cells.

Authors:  Hidesato Ogawa; Kei-Ichiro Ishiguro; Stefan Gaubatz; David M Livingston; Yoshihiro Nakatani
Journal:  Science       Date:  2002-05-10       Impact factor: 47.728

4.  Malignant brain tumor repeats: a three-leaved propeller architecture with ligand/peptide binding pockets.

Authors:  Wooi Koon Wang; Valentina Tereshko; Piernicola Boccuni; Donal MacGrogan; Stephen D Nimer; Dinshaw J Patel
Journal:  Structure       Date:  2003-07       Impact factor: 5.006

5.  Rb targets histone H3 methylation and HP1 to promoters.

Authors:  S J Nielsen; R Schneider; U M Bauer; A J Bannister; A Morrison; D O'Carroll; R Firestein; M Cleary; T Jenuwein; R E Herrera; T Kouzarides
Journal:  Nature       Date:  2001-08-02       Impact factor: 49.962

6.  The p400 complex is an essential E1A transformation target.

Authors:  M Fuchs; J Gerber; R Drapkin; S Sif; T Ikura; V Ogryzko; W S Lane; Y Nakatani; D M Livingston
Journal:  Cell       Date:  2001-08-10       Impact factor: 41.582

Review 7.  The retinoblastoma tumour suppressor in development and cancer.

Authors:  Marie Classon; Ed Harlow
Journal:  Nat Rev Cancer       Date:  2002-12       Impact factor: 60.716

Review 8.  Cellular memory and dynamic regulation of polycomb group proteins.

Authors:  Frédéric Bantignies; Giacomo Cavalli
Journal:  Curr Opin Cell Biol       Date:  2006-05-02       Impact factor: 8.382

9.  Rb-mediated heterochromatin formation and silencing of E2F target genes during cellular senescence.

Authors:  Masashi Narita; Sabrina Nũnez; Edith Heard; Masako Narita; Athena W Lin; Stephen A Hearn; David L Spector; Gregory J Hannon; Scott W Lowe
Journal:  Cell       Date:  2003-06-13       Impact factor: 41.582

10.  The domino gene of Drosophila encodes novel members of the SWI2/SNF2 family of DNA-dependent ATPases, which contribute to the silencing of homeotic genes.

Authors:  M L Ruhf; A Braun; O Papoulas; J W Tamkun; N Randsholt; M Meister
Journal:  Development       Date:  2001-04       Impact factor: 6.868

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  40 in total

Review 1.  Polycomb group proteins: multi-faceted regulators of somatic stem cells and cancer.

Authors:  Martin Sauvageau; Guy Sauvageau
Journal:  Cell Stem Cell       Date:  2010-09-03       Impact factor: 24.633

Review 2.  Drosophila RNAi screening in a postgenomic world.

Authors:  Chris Bakal
Journal:  Brief Funct Genomics       Date:  2011-07-12       Impact factor: 4.241

Review 3.  E2F-associated chromatin modifiers and cell cycle control.

Authors:  Alexandre Blais; Brian D Dynlacht
Journal:  Curr Opin Cell Biol       Date:  2007-11-19       Impact factor: 8.382

Review 4.  Neurobiological applications of small molecule screening.

Authors:  Andras Bauer; Brent Stockwell
Journal:  Chem Rev       Date:  2008-05-01       Impact factor: 60.622

Review 5.  Insights to transcriptional networks by using high throughput RNAi strategies.

Authors:  Jaakko Mattila; Oscar Puig
Journal:  Brief Funct Genomics       Date:  2009-12-01       Impact factor: 4.241

6.  The complex containing Drosophila Myb and RB/E2F2 regulates cytokinesis in a histone H2Av-dependent manner.

Authors:  Heather DeBruhl; Hong Wen; Joseph S Lipsick
Journal:  Mol Cell Biol       Date:  2013-02-25       Impact factor: 4.272

7.  Myc and the Tip60 chromatin remodeling complex control neuroblast maintenance and polarity in Drosophila.

Authors:  Katja Rust; Manu D Tiwari; Vivek Kumar Mishra; Ferdi Grawe; Andreas Wodarz
Journal:  EMBO J       Date:  2018-07-11       Impact factor: 11.598

8.  The domino SWI2/SNF2 Gene Product Represses Cell Death in Drosophila melanogaster.

Authors:  Kaitlyn Ellis; Joanna Wardwell-Ozgo; Kenneth H Moberg; Barry Yedvobnick
Journal:  G3 (Bethesda)       Date:  2018-07-02       Impact factor: 3.154

9.  Drosophila lipid droplets buffer the H2Av supply to protect early embryonic development.

Authors:  Zhihuan Li; Matthew R Johnson; Zhonghe Ke; Lili Chen; Michael A Welte
Journal:  Curr Biol       Date:  2014-06-12       Impact factor: 10.834

10.  Synthetic lethal RNAi screening identifies sensitizing targets for gemcitabine therapy in pancreatic cancer.

Authors:  David O Azorsa; Irma M Gonzales; Gargi D Basu; Ashish Choudhary; Shilpi Arora; Kristen M Bisanz; Jeffrey A Kiefer; Meredith C Henderson; Jeffrey M Trent; Daniel D Von Hoff; Spyro Mousses
Journal:  J Transl Med       Date:  2009-06-11       Impact factor: 5.531

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