Literature DB >> 17485671

Evidence for mutation showers.

Jicheng Wang1, Kelly D Gonzalez, William A Scaringe, Kimberly Tsai, Ning Liu, Dongqing Gu, Wenyan Li, Kathleen A Hill, Steve S Sommer.   

Abstract

Mutants in the Big Blue transgenic mouse system show spontaneous clustered multiple mutations with unexpectedly high frequency, consistent with chronocoordinate events. We tested the prediction that the multiple mutations seen within the lacI mutation target sometimes occur in the context of chronocoordinate multiple mutations spanning multiple kilobases (mutation showers). Additional sequencing of mutants was performed in regions immediately flanking the lacI region (total of 10.7 kb). Nineteen additional mutations were found outside the lacI region ("ectomutations") from 10 mutants containing two or more lacI mutations, whereas only one ectomutation was found in 130 mutants with a single mutation (P < 0.0001). The mutation showers had an average of approximately one mutation per 3 kb. Four mutants showed closely spaced double mutations in the new sequence, and analysis of the spacing between these mutations revealed significant clustering (P = 0.0098). To determine the extent of the mutation showers, regions (8.5 kb total) remote from the lacI region (approximately 16-17 kb away) were sequenced. Only two additional ectomutations were found in these remote regions, consistent with mutation showers that generally do not extend more than approximately 30 kb. We conclude that mutation showers exist and that they constitute at least 0.2% and possibly 1% or more of mutational events observed in this system. The existence of mutation showers has implications for oncogenesis and evolution, raising the possibilities of "cancer in an instant" and "introns as sponges to reduce the deleterious impact of mutation showers."

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Year:  2007        PMID: 17485671      PMCID: PMC1895962          DOI: 10.1073/pnas.0610902104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

1.  Evidence that proximal multiple mutations in Big Blue transgenic mice are dependent events.

Authors:  V L Buettner; K A Hill; W A Scaringe; S S Sommer
Journal:  Mutat Res       Date:  2000-09-18       Impact factor: 2.433

2.  In vivo transgenic mutation assays.

Authors:  Véronique Thybaud; Stephen Dean; Takehiko Nohmi; Johan de Boer; George R Douglas; Barry W Glickman; Nancy J Gorelick; John A Heddle; Robert H Heflich; Iain Lambert; Hans-Jörg Martus; Jon C Mirsalis; Takayoshi Suzuki; Nobuhiro Yajima
Journal:  Mutat Res       Date:  2003-10-07       Impact factor: 2.433

3.  The unexpected landscape of in vivo somatic mutation in a human epithelial cell lineage.

Authors:  Lorel M Colgin; Alden F M Hackmann; Mary J Emond; Raymond J Monnat
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-29       Impact factor: 11.205

4.  Elevated mutant frequencies and predominance of G:C to A:T transition mutations in Msh6(-/-) small intestinal epithelium.

Authors:  Sean C Mark; Linda E Sandercock; H Artee Luchman; Agnes Baross; Winfried Edelmann; Frank R Jirik
Journal:  Oncogene       Date:  2002-10-10       Impact factor: 9.867

5.  Spontaneous microdeletions and microinsertions in a transgenic mouse mutation detection system: analysis of age, tissue, and sequence specificity.

Authors:  A Halangoda; J G Still; K A Hill; S S Sommer
Journal:  Environ Mol Mutagen       Date:  2001       Impact factor: 3.216

6.  Through a glass, darkly: reflections of mutation from lacI transgenic mice.

Authors:  G R Stuart; B W Glickman
Journal:  Genetics       Date:  2000-07       Impact factor: 4.562

7.  Spontaneous mutation frequency and pattern in Big Blue mice fed a vitamin E-supplemented diet.

Authors:  S R Moore; K A Hill; P W Heinmoller; A Halangoda; M Kunishige; V L Buettner; K S Graham; S S Sommer
Journal:  Environ Mol Mutagen       Date:  1999       Impact factor: 3.216

Review 8.  Multiple mutations and cancer.

Authors:  Lawrence A Loeb; Keith R Loeb; Jon P Anderson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-27       Impact factor: 11.205

9.  Deoxyribonucleotide pool imbalance stimulates deletions in HeLa cell mitochondrial DNA.

Authors:  Shiwei Song; Linda J Wheeler; Christopher K Mathews
Journal:  J Biol Chem       Date:  2003-09-17       Impact factor: 5.157

10.  Spontaneous tandem-base mutations (TBM) show dramatic tissue, age, pattern and spectrum specificity.

Authors:  Kathleen A Hill; Jicheng Wang; Kelly D Farwell; Steve S Sommer
Journal:  Mutat Res       Date:  2003-01-10       Impact factor: 2.433

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  41 in total

1.  The rate of establishment of complex adaptations.

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Journal:  Mol Biol Evol       Date:  2010-01-29       Impact factor: 16.240

2.  Localized hypermutation and associated gene losses in legume chloroplast genomes.

Authors:  Alan M Magee; Sue Aspinall; Danny W Rice; Brian P Cusack; Marie Sémon; Antoinette S Perry; Sasa Stefanović; Dan Milbourne; Susanne Barth; Jeffrey D Palmer; John C Gray; Tony A Kavanagh; Kenneth H Wolfe
Journal:  Genome Res       Date:  2010-10-26       Impact factor: 9.043

3.  Mutations in clusters and showers.

Authors:  John W Drake
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-10       Impact factor: 11.205

Review 4.  Too many mutants with multiple mutations.

Authors:  John W Drake
Journal:  Crit Rev Biochem Mol Biol       Date:  2007 Jul-Aug       Impact factor: 8.250

5.  Damage-induced localized hypermutability.

Authors:  Lauranell H Burch; Yong Yang; Joan F Sterling; Steven A Roberts; Frank G Chao; Hong Xu; Leilei Zhang; Jesse Walsh; Michael A Resnick; Piotr A Mieczkowski; Dmitry A Gordenin
Journal:  Cell Cycle       Date:  2011-04-01       Impact factor: 4.534

6.  Mutator alleles of yeast DNA polymerase zeta.

Authors:  Ayako N Sakamoto; Jana E Stone; Grace E Kissling; Scott D McCulloch; Youri I Pavlov; Thomas A Kunkel
Journal:  DNA Repair (Amst)       Date:  2007-08-21

7.  Small variable segments constitute a major type of diversity of bacterial genomes at the species level.

Authors:  Fabrice Touzain; Erick Denamur; Claudine Médigue; Valérie Barbe; Meriem El Karoui; Marie-Agnès Petit
Journal:  Genome Biol       Date:  2010-04-30       Impact factor: 13.583

8.  High mutability of the tumor suppressor genes RASSF1 and RBSP3 (CTDSPL) in cancer.

Authors:  Vladimir I Kashuba; Tatiana V Pavlova; Elvira V Grigorieva; Alexey Kutsenko; Surya Pavan Yenamandra; Jingfeng Li; Fuli Wang; Alexei I Protopopov; Veronika I Zabarovska; Vera Senchenko; Klas Haraldson; Tatiana Eshchenko; Julia Kobliakova; Olga Vorontsova; Igor Kuzmin; Eleonora Braga; Vladimir M Blinov; Lev L Kisselev; Yi-Xin Zeng; Ingemar Ernberg; Michael I Lerman; George Klein; Eugene R Zabarovsky
Journal:  PLoS One       Date:  2009-05-29       Impact factor: 3.240

9.  Analysis of cancer mutation signatures in blood by a novel ultra-sensitive assay: monitoring of therapy or recurrence in non-metastatic breast cancer.

Authors:  Zhenbin Chen; Jinong Feng; Carolyn H Buzin; Qiang Liu; Lawrence Weiss; Kemp Kernstine; George Somlo; Steve S Sommer
Journal:  PLoS One       Date:  2009-09-28       Impact factor: 3.240

10.  Is evolution Darwinian or/and Lamarckian?

Authors:  Eugene V Koonin; Yuri I Wolf
Journal:  Biol Direct       Date:  2009-11-11       Impact factor: 4.540

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