Literature DB >> 17480075

Guiding bacteria with small molecules and RNA.

Shana Topp1, Justin P Gallivan.   

Abstract

Chemotactic bacteria navigate their chemical environment by coupling sophisticated information processing capabilities to molecular motors that propel the cells forward. The ability to reprogram bacteria to follow entirely new chemical signals would create powerful new opportunities in bioremediation, bionanotechnology, and synthetic biology. However, the complexities of bacterial signaling and limitations of current protein engineering methods combine to make reprogramming bacteria to follow novel molecules a difficult task. Here we show that by using a synthetic riboswitch rather than an engineered protein to recognize a ligand, E. coli can be guided toward and precisely localized to a completely new chemical signal.

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Year:  2007        PMID: 17480075      PMCID: PMC2564849          DOI: 10.1021/ja0692480

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  34 in total

1.  In vitro evolution of beta-glucuronidase into a beta-galactosidase proceeds through non-specific intermediates.

Authors:  I Matsumura; A D Ellington
Journal:  J Mol Biol       Date:  2001-01-12       Impact factor: 5.469

Review 2.  How signals are heard during bacterial chemotaxis: protein-protein interactions in sensory signal propagation.

Authors:  A Bren; M Eisenbach
Journal:  J Bacteriol       Date:  2000-12       Impact factor: 3.490

Review 3.  In vitro selection of functional nucleic acids.

Authors:  D S Wilson; J W Szostak
Journal:  Annu Rev Biochem       Date:  1999       Impact factor: 23.643

4.  Inter-receptor communication through arrays of bacterial chemoreceptors.

Authors:  Jason E Gestwicki; Laura L Kiessling
Journal:  Nature       Date:  2002-01-03       Impact factor: 49.962

5.  Changing the specificity of a bacterial chemoreceptor.

Authors:  Paige Derr; Eric Boder; Mark Goulian
Journal:  J Mol Biol       Date:  2005-11-28       Impact factor: 5.469

6.  Microoxen: microorganisms to move microscale loads.

Authors:  Douglas B Weibel; Piotr Garstecki; Declan Ryan; Willow R DiLuzio; Michael Mayer; Jennifer E Seto; George M Whitesides
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-15       Impact factor: 11.205

7.  A high-throughput screen for synthetic riboswitches reveals mechanistic insights into their function.

Authors:  Sean A Lynch; Shawn K Desai; Hari Krishna Sajja; Justin P Gallivan
Journal:  Chem Biol       Date:  2007-02

Review 8.  Systems biology of bacterial chemotaxis.

Authors:  Melinda D Baker; Peter M Wolanin; Jeffry B Stock
Journal:  Curr Opin Microbiol       Date:  2006-03-09       Impact factor: 7.934

9.  Environmentally controlled invasion of cancer cells by engineered bacteria.

Authors:  J Christopher Anderson; Elizabeth J Clarke; Adam P Arkin; Christopher A Voigt
Journal:  J Mol Biol       Date:  2005-11-14       Impact factor: 5.469

10.  Treatment of murine colitis by Lactococcus lactis secreting interleukin-10.

Authors:  L Steidler; W Hans; L Schotte; S Neirynck; F Obermeier; W Falk; W Fiers; E Remaut
Journal:  Science       Date:  2000-08-25       Impact factor: 47.728

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  50 in total

Review 1.  Ingestion-controlling network: what's language got to do with it?

Authors:  Michael Myslobodsky; Richard Coppola
Journal:  Rev Neurosci       Date:  2010       Impact factor: 4.353

Review 2.  Overview of regulatory strategies and molecular elements in metabolic engineering of bacteria.

Authors:  Tianwen Wang; Xingyuan Ma; Guocheng Du; Jian Chen
Journal:  Mol Biotechnol       Date:  2012-11       Impact factor: 2.695

Review 3.  Synthetic RNA switches as a tool for temporal and spatial control over gene expression.

Authors:  Andrew L Chang; Joshua J Wolf; Christina D Smolke
Journal:  Curr Opin Biotechnol       Date:  2012-02-03       Impact factor: 9.740

4.  Using simulations and kinetic network models to reveal the dynamics and functions of riboswitches.

Authors:  Jong-Chin Lin; Jeseong Yoon; Changbong Hyeon; D Thirumalai
Journal:  Methods Enzymol       Date:  2015-02-03       Impact factor: 1.600

5.  Construction of a genetic multiplexer to toggle between chemosensory pathways in Escherichia coli.

Authors:  Tae Seok Moon; Elizabeth J Clarke; Eli S Groban; Alvin Tamsir; Ryan M Clark; Matthew Eames; Tanja Kortemme; Christopher A Voigt
Journal:  J Mol Biol       Date:  2010-12-23       Impact factor: 5.469

Review 6.  Toward reprogramming bacteria with small molecules and RNA.

Authors:  Justin P Gallivan
Journal:  Curr Opin Chem Biol       Date:  2007-11-19       Impact factor: 8.822

Review 7.  Functional nucleic acid sensors.

Authors:  Juewen Liu; Zehui Cao; Yi Lu
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

8.  Riboswitches in unexpected places--a synthetic riboswitch in a protein coding region.

Authors:  Shana Topp; Justin P Gallivan
Journal:  RNA       Date:  2008-10-22       Impact factor: 4.942

Review 9.  Emerging applications of riboswitches in chemical biology.

Authors:  Shana Topp; Justin P Gallivan
Journal:  ACS Chem Biol       Date:  2010-01-15       Impact factor: 5.100

10.  Design principles for riboswitch function.

Authors:  Chase L Beisel; Christina D Smolke
Journal:  PLoS Comput Biol       Date:  2009-04-17       Impact factor: 4.475

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