Literature DB >> 21185306

Construction of a genetic multiplexer to toggle between chemosensory pathways in Escherichia coli.

Tae Seok Moon1, Elizabeth J Clarke, Eli S Groban, Alvin Tamsir, Ryan M Clark, Matthew Eames, Tanja Kortemme, Christopher A Voigt.   

Abstract

Many applications require cells to switch between discrete phenotypic states. Here, we harness the FimBE inversion switch to flip a promoter, allowing expression to be toggled between two genes oriented in opposite directions. The response characteristics of the switch are characterized using two-color cytometry. This switch is used to toggle between orthogonal chemosensory pathways by controlling the expression of CheW and CheW*, which interact with the Tar (aspartate) and Tsr* (serine) chemoreceptors, respectively. CheW* and Tsr* each contain a mutation at their protein-protein interface such that they interact with each other. The complete genetic program containing an arabinose-inducible FimE controlling CheW/CheW* (and constitutively expressed tar/tsr*) is transformed into an Escherichia coli strain lacking all native chemoreceptors. This program enables bacteria to swim toward serine or aspartate in the absence or in the presence of arabinose, respectively. Thus, the program functions as a multiplexer with arabinose as the selector. This demonstrates the ability of synthetic genetic circuits to connect to a natural signaling network to switch between phenotypes.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 21185306      PMCID: PMC3033806          DOI: 10.1016/j.jmb.2010.12.019

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  71 in total

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Authors:  Sang-Hyun Park; Ali Zarrinpar; Wendell A Lim
Journal:  Science       Date:  2003-01-02       Impact factor: 47.728

2.  The roles of the multiple CheW and CheA homologues in chemotaxis and in chemoreceptor localization in Rhodobacter sphaeroides.

Authors:  A C Martin; G H Wadhams; J P Armitage
Journal:  Mol Microbiol       Date:  2001-06       Impact factor: 3.501

3.  Changing the specificity of a bacterial chemoreceptor.

Authors:  Paige Derr; Eric Boder; Mark Goulian
Journal:  J Mol Biol       Date:  2005-11-28       Impact factor: 5.469

4.  Chemosensing in Escherichia coli: two regimes of two-state receptors.

Authors:  Juan E Keymer; Robert G Endres; Monica Skoge; Yigal Meir; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-30       Impact factor: 11.205

5.  The effect of environmental conditions on the motility of Escherichia coli.

Authors:  J Adler; B Templeton
Journal:  J Gen Microbiol       Date:  1967-02

6.  Polar location of the chemoreceptor complex in the Escherichia coli cell.

Authors:  J R Maddock; L Shapiro
Journal:  Science       Date:  1993-03-19       Impact factor: 47.728

7.  A cytoplasmic inhibitor of the JNK signal transduction pathway.

Authors:  M Dickens; J S Rogers; J Cavanagh; A Raitano; Z Xia; J R Halpern; M E Greenberg; C L Sawyers; R J Davis
Journal:  Science       Date:  1997-08-01       Impact factor: 47.728

8.  Plasticity in amino acid sensing of the chimeric receptor Taz.

Authors:  Konstantinos M Michalodimitrakis; Victor Sourjik; Luis Serrano
Journal:  Mol Microbiol       Date:  2005-10       Impact factor: 3.501

9.  Rearrangement of nitrogen fixation genes during heterocyst differentiation in the cyanobacterium Anabaena.

Authors:  J W Golden; S J Robinson; R Haselkorn
Journal:  Nature       Date:  1985 Apr 4-10       Impact factor: 49.962

10.  Organization of the receptor-kinase signaling array that regulates Escherichia coli chemotaxis.

Authors:  Mikhail N Levit; Thorsten W Grebe; Jeffry B Stock
Journal:  J Biol Chem       Date:  2002-07-15       Impact factor: 5.157

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  20 in total

1.  Extending homologous sequence based on the single gene mutants by one-step PCR for efficient multiple gene knockouts.

Authors:  Mingji Li; Pengfei Gu; Junhua Kang; Yang Wang; Qian Wang; Qingsheng Qi
Journal:  Folia Microbiol (Praha)       Date:  2012-03-30       Impact factor: 2.099

2.  Genetic circuit performance under conditions relevant for industrial bioreactors.

Authors:  Felix Moser; Nicolette J Broers; Sybe Hartmans; Alvin Tamsir; Richard Kerkman; Johannes A Roubos; Roel Bovenberg; Christopher A Voigt
Journal:  ACS Synth Biol       Date:  2012-11-05       Impact factor: 5.110

3.  Engineering robust control of two-component system phosphotransfer using modular scaffolds.

Authors:  Weston R Whitaker; Stephanie A Davis; Adam P Arkin; John E Dueber
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-15       Impact factor: 11.205

4.  Modelling co-translational dimerization for programmable nonlinearity in synthetic biology.

Authors:  Ruud Stoof; Ángel Goñi-Moreno
Journal:  J R Soc Interface       Date:  2020-11-04       Impact factor: 4.118

Review 5.  Digital and analog gene circuits for biotechnology.

Authors:  Nathaniel Roquet; Timothy K Lu
Journal:  Biotechnol J       Date:  2014-02-20       Impact factor: 4.677

Review 6.  Principles of genetic circuit design.

Authors:  Jennifer A N Brophy; Christopher A Voigt
Journal:  Nat Methods       Date:  2014-05       Impact factor: 28.547

7.  Molecular recordings by directed CRISPR spacer acquisition.

Authors:  Seth L Shipman; Jeff Nivala; Jeffrey D Macklis; George M Church
Journal:  Science       Date:  2016-06-09       Impact factor: 47.728

8.  Characterization and synthetic biology of lipase from Bacillus amyloliquefaciens strain.

Authors:  Muhammad Tahir Khan; Aman Chandra Kaushik; Qurrat Ul Ain Rana; Shaukat Iqbal Malik; Anwar Sheed Khan; Dong-Qing Wei; Wasim Sajjad; Shabir Ahmad; Sajid Ali; Muhammad Irfan
Journal:  Arch Microbiol       Date:  2020-03-26       Impact factor: 2.552

9.  Multicellular computing using conjugation for wiring.

Authors:  Angel Goñi-Moreno; Martyn Amos; Fernando de la Cruz
Journal:  PLoS One       Date:  2013-06-20       Impact factor: 3.240

10.  Biological signal processing with a genetic toggle switch.

Authors:  Patrick Hillenbrand; Georg Fritz; Ulrich Gerland
Journal:  PLoS One       Date:  2013-07-16       Impact factor: 3.240

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