Literature DB >> 17477839

Physics of proteins.

Jayanth R Banavar1, Amos Maritan.   

Abstract

Globular proteins are a key component of the network of life. Over many decades much experimental data on proteins have been gathered, yet theoretical progress has been somewhat limited. We show that the results accumulated over the years inexorably lead to a unified framework for understanding proteins. The framework predicts the existence of a fixed menu of folds determined by geometry, clarifies the role of the amino acid sequence in selecting the native-state structure from this menu, and explains the propensity for amyloid formation. The experimental data and the new approach reveal an astonishing simplicity underlying the protein problem.

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Year:  2007        PMID: 17477839     DOI: 10.1146/annurev.biophys.36.040306.132808

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN: 1056-8700


  19 in total

1.  The role of secondary structure in protein structure selection.

Authors:  Yong-Yun Ji; You-Quan Li
Journal:  Eur Phys J E Soft Matter       Date:  2010-05-25       Impact factor: 1.890

2.  A bioinspired approach for controlling accessibility in calix[4]arene-bound metal cluster catalysts.

Authors:  Namal de Silva; Jeong-Myeong Ha; Andrew Solovyov; Michael M Nigra; Isao Ogino; Sheila W Yeh; Kathleen A Durkin; Alexander Katz
Journal:  Nat Chem       Date:  2010-10-03       Impact factor: 24.427

3.  First-principles design of nanomachines.

Authors:  Jayanth R Banavar; Marek Cieplak; Trinh Xuan Hoang; Amos Maritan
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-09       Impact factor: 11.205

4.  Amino acid interaction preferences in proteins.

Authors:  Anupam Nath Jha; Saraswathi Vishveshwara; Jayanth R Banavar
Journal:  Protein Sci       Date:  2010-03       Impact factor: 6.725

Review 5.  The protein folding problem.

Authors:  Ken A Dill; S Banu Ozkan; M Scott Shell; Thomas R Weikl
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

6.  Understanding protein structure from a percolation perspective.

Authors:  Dhruba Deb; Saraswathi Vishveshwara; Smitha Vishveshwara
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

7.  Monte Carlo simulations of the HP model (the "Ising model" of protein folding).

Authors:  Ying Wai Li; Thomas Wüst; David P Landau
Journal:  Comput Phys Commun       Date:  2011-09-01       Impact factor: 4.390

8.  The phylogenomic roots of modern biochemistry: origins of proteins, cofactors and protein biosynthesis.

Authors:  Gustavo Caetano-Anollés; Kyung Mo Kim; Derek Caetano-Anollés
Journal:  J Mol Evol       Date:  2012-01-01       Impact factor: 2.395

9.  Protein folding, misfolding and aggregation: The importance of two-electron stabilizing interactions.

Authors:  Andrzej Stanisław Cieplak
Journal:  PLoS One       Date:  2017-09-18       Impact factor: 3.240

10.  A condensation-ordering mechanism in nanoparticle-catalyzed peptide aggregation.

Authors:  Stefan Auer; Antonio Trovato; Michele Vendruscolo
Journal:  PLoS Comput Biol       Date:  2009-08-14       Impact factor: 4.475

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