Literature DB >> 19359489

First-principles design of nanomachines.

Jayanth R Banavar1, Marek Cieplak, Trinh Xuan Hoang, Amos Maritan.   

Abstract

Learning from nature's amazing molecular machines, globular proteins, we present a framework for the predictive design of nanomachines. We show that the crucial ingredients for a chain molecule to behave as a machine are its inherent anisotropy and the coupling between the local Frenet coordinate reference frames of nearby monomers. We demonstrate that, even in the absence of heterogeneity, protein-like behavior is obtained for a simple chain molecule made up of just 30 hard spheres. This chain spontaneously switches between 2 distinct geometries, a single helix and a dual helix, merely because of thermal fluctuations.

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Year:  2009        PMID: 19359489      PMCID: PMC2678487          DOI: 10.1073/pnas.0901429106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  The once and future nanomachine.

Authors:  G M Whitesides
Journal:  Sci Am       Date:  2001-09       Impact factor: 2.142

2.  Novel polymers: molecular to nanoscale order in three dimensions.

Authors:  K L Wooley; J S Moore; C Wu; Y Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-10       Impact factor: 11.205

3.  Geometry and symmetry presculpt the free-energy landscape of proteins.

Authors:  Trinh Xuan Hoang; Antonio Trovato; Flavio Seno; Jayanth R Banavar; Amos Maritan
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-17       Impact factor: 11.205

4.  Conformational molecular switch of the azobenzene molecule: a scanning tunneling microscopy study.

Authors:  Byoung-Young Choi; Se-Jong Kahng; Seungchul Kim; Hajin Kim; Hyo Won Kim; Young Jae Song; Jisoon Ihm; Young Kuk
Journal:  Phys Rev Lett       Date:  2006-04-21       Impact factor: 9.161

Review 5.  Physics of proteins.

Authors:  Jayanth R Banavar; Amos Maritan
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

6.  Conformational changes in an ultrafast light-driven enzyme determine catalytic activity.

Authors:  Olga A Sytina; Derren J Heyes; C Neil Hunter; Maxime T Alexandre; Ivo H M van Stokkum; Rienk van Grondelle; Marie Louise Groot
Journal:  Nature       Date:  2008-12-18       Impact factor: 49.962

7.  Spatial periodicity in molecular switching.

Authors:  Carlo Dri; Maike V Peters; Jutta Schwarz; Stefan Hecht; Leonhard Grill
Journal:  Nat Nanotechnol       Date:  2008-09-14       Impact factor: 39.213

8.  Consecutive conformational transitions and deaggregation of multiple-helical poly(diacetylene)s.

Authors:  Jan Weiss; Eike Jahnke; Nikolai Severin; Jürgen P Rabe; Holger Frauenrath
Journal:  Nano Lett       Date:  2008-05-08       Impact factor: 11.189

Review 9.  The classification and origins of protein folding patterns.

Authors:  C Chothia; A V Finkelstein
Journal:  Annu Rev Biochem       Date:  1990       Impact factor: 23.643

Review 10.  Protein volume in solution.

Authors:  A A Zamyatnin
Journal:  Prog Biophys Mol Biol       Date:  1972       Impact factor: 3.667

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  3 in total

1.  Material witness: What makes nanomachines work?

Authors:  Philip Ball
Journal:  Nat Mater       Date:  2009-06       Impact factor: 43.841

2.  A coarse-grained approach to protein design: learning from design to understand folding.

Authors:  Ivan Coluzza
Journal:  PLoS One       Date:  2011-07-01       Impact factor: 3.240

3.  The role of directional interactions in the designability of generalized heteropolymers.

Authors:  Chiara Cardelli; Valentino Bianco; Lorenzo Rovigatti; Francesca Nerattini; Luca Tubiana; Christoph Dellago; Ivan Coluzza
Journal:  Sci Rep       Date:  2017-07-10       Impact factor: 4.379

  3 in total

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