Literature DB >> 20524028

The role of secondary structure in protein structure selection.

Yong-Yun Ji1, You-Quan Li.   

Abstract

The presence of highly regular secondary structure motifs in protein structure is a fascinating area of study. The secondary structures play important roles in protein structure and protein folding. We investigate the folding properties of protein by introducing the effect of secondary structure elements. We observed the emergence of several structures with both large average energy gap and high designability. The dynamic study indicates that these structures are more foldable than those without the effect of secondary structures.

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Year:  2010        PMID: 20524028     DOI: 10.1140/epje/i2010-10591-5

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  29 in total

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Journal:  Nature       Date:  2000-07-20       Impact factor: 49.962

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Authors:  G Salvi; P De Los Rios
Journal:  Phys Rev Lett       Date:  2003-12-16       Impact factor: 9.161

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Authors:  Yong-Yun Ji; You-Quan Li; Jun-Wen Mao; Xiao-Wei Tang
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-10-12

Review 5.  Protein misfolding and disease: from the test tube to the organism.

Authors:  Leila M Luheshi; Damian C Crowther; Christopher M Dobson
Journal:  Curr Opin Chem Biol       Date:  2008-03-18       Impact factor: 8.822

Review 6.  Physics of proteins.

Authors:  Jayanth R Banavar; Amos Maritan
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

7.  Emergence of preferred structures in a simple model of protein folding.

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Journal:  Science       Date:  1996-08-02       Impact factor: 47.728

8.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505

9.  The origins of protein secondary structure. Effects of packing density and hydrogen bonding studied by a fast conformational search.

Authors:  N G Hunt; L M Gregoret; F E Cohen
Journal:  J Mol Biol       Date:  1994-08-12       Impact factor: 5.469

10.  Origins of structure in globular proteins.

Authors:  H S Chan; K A Dill
Journal:  Proc Natl Acad Sci U S A       Date:  1990-08       Impact factor: 11.205

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  6 in total

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Journal:  J Mater Chem B       Date:  2020-08-26       Impact factor: 6.331

2.  Comparative Modeling and Evaluation of Leukotriene B4 Receptors for Selective Drug Discovery Towards the Treatment of Inflammatory Diseases.

Authors:  Mahmoud A A Ibrahim; Alaa M A Hassan
Journal:  Protein J       Date:  2018-12       Impact factor: 2.371

3.  DREB2 (dehydration-responsive element-binding protein 2) type transcription factor in sorghum (Sorghum bicolor): genome-wide identification, characterization and expression profiles under cadmium and salt stresses.

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Journal:  3 Biotech       Date:  2018-09-28       Impact factor: 2.406

4.  Discovery of Klotho peptide antagonists against Wnt3 and Wnt3a target proteins using combination of protein engineering, protein-protein docking, peptide docking and molecular dynamics simulations.

Authors:  Shaher Bano Mirza; Ramin Ekhteiari Salmas; M Qaiser Fatmi; Serdar Durdagi
Journal:  J Enzyme Inhib Med Chem       Date:  2016-10-21       Impact factor: 5.051

5.  In silico analysis of missense variants of the C1qA gene related to infection and autoimmune diseases.

Authors:  Mohammed Y Behairy; ALi A Abdelrahman; Hoda Y Abdallah; Emad El-Deen A Ibrahim; Anwar A Sayed; Marwa M Azab
Journal:  J Taibah Univ Med Sci       Date:  2022-05-13

6.  Designing a novel SOX9 based multi-epitope vaccine to combat metastatic triple-negative breast cancer using immunoinformatics approach.

Authors:  HemaNandini Rajendran Krishnamoorthy; Ramanathan Karuppasamy
Journal:  Mol Divers       Date:  2022-10-10       Impact factor: 3.364

  6 in total

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