Literature DB >> 17466511

Admixture mapping as a tool in gene discovery.

Michael F Seldin1.   

Abstract

Admixture mapping is a rapidly developing method to map susceptibility alleles in complex genetic disease associated with continental ancestry. Theoretically, when admixture between continental populations has occurred relatively recently, the chromosomal segments derived from the parental populations can be deduced from the differences in genotype allele frequencies. Progress in computational algorithms, in identification of ancestry informative single nucleotide polymorphisms, and in recent studies applying these tools suggests that this approach will complement other strategies for identifying the variation that underlies many complex diseases.

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Year:  2007        PMID: 17466511      PMCID: PMC3146309          DOI: 10.1016/j.gde.2007.03.002

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  35 in total

1.  Populations of hybrid origin as source material for the detection of linkage.

Authors:  D C RIFE
Journal:  Am J Hum Genet       Date:  1954-03       Impact factor: 11.025

2.  A hidden Markov modeling approach for admixture mapping based on case-control data.

Authors:  Chun Zhang; Kun Chen; Michael F Seldin; Hongzhe Li
Journal:  Genet Epidemiol       Date:  2004-11       Impact factor: 2.135

3.  Statistical tests for admixture mapping with case-control and cases-only data.

Authors:  Giovanni Montana; Jonathan K Pritchard
Journal:  Am J Hum Genet       Date:  2004-09-22       Impact factor: 11.025

4.  A high-density admixture map for disease gene discovery in african americans.

Authors:  Michael W Smith; Nick Patterson; James A Lautenberger; Ann L Truelove; Gavin J McDonald; Alicja Waliszewska; Bailey D Kessing; Michael J Malasky; Charles Scafe; Ernest Le; Philip L De Jager; Andre A Mignault; Zeng Yi; Guy De The; Myron Essex; Jean-Louis Sankale; Jason H Moore; Kwabena Poku; John P Phair; James J Goedert; David Vlahov; Scott M Williams; Sarah A Tishkoff; Cheryl A Winkler; Francisco M De La Vega; Trevor Woodage; John J Sninsky; David A Hafler; David Altshuler; Dennis A Gilbert; Stephen J O'Brien; David Reich
Journal:  Am J Hum Genet       Date:  2004-04-14       Impact factor: 11.025

5.  Mapping genes that underlie ethnic differences in disease risk: methods for detecting linkage in admixed populations, by conditioning on parental admixture.

Authors:  P M McKeigue
Journal:  Am J Hum Genet       Date:  1998-07       Impact factor: 11.025

Review 6.  Linkage disequilibrium mapping of complex disease: fantasy or reality?

Authors:  J D Terwilliger; K M Weiss
Journal:  Curr Opin Biotechnol       Date:  1998-12       Impact factor: 9.740

7.  High incidence and prevalence of rheumatoid arthritis in Pima Indians.

Authors:  A Del Puente; W C Knowler; D J Pettitt; P H Bennett
Journal:  Am J Epidemiol       Date:  1989-06       Impact factor: 4.897

Review 8.  Diabetes in American Indians and other native populations of the New World.

Authors:  K M West
Journal:  Diabetes       Date:  1974-10       Impact factor: 9.461

9.  Updated data on proximal femur bone mineral levels of US adults.

Authors:  A C Looker; H W Wahner; W L Dunn; M S Calvo; T B Harris; S P Heyse; C C Johnston; R Lindsay
Journal:  Osteoporos Int       Date:  1998       Impact factor: 4.507

10.  Mapping by admixture linkage disequilibrium in human populations: limits and guidelines.

Authors:  J C Stephens; D Briscoe; S J O'Brien
Journal:  Am J Hum Genet       Date:  1994-10       Impact factor: 11.025

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  24 in total

1.  Inferring genetic ancestry: opportunities, challenges, and implications.

Authors:  Charmaine D Royal; John Novembre; Stephanie M Fullerton; David B Goldstein; Jeffrey C Long; Michael J Bamshad; Andrew G Clark
Journal:  Am J Hum Genet       Date:  2010-05-14       Impact factor: 11.025

2.  Race as a social construct in head and neck cancer outcomes.

Authors:  Maria J Worsham; George Divine; Rick A Kittles
Journal:  Otolaryngol Head Neck Surg       Date:  2011-02-04       Impact factor: 3.497

3.  Analysis of genomic admixture in Uyghur and its implication in mapping strategy.

Authors:  Shuhua Xu; Wei Huang; Ji Qian; Li Jin
Journal:  Am J Hum Genet       Date:  2008-03-20       Impact factor: 11.025

4.  Analysis of genomic diversity in Mexican Mestizo populations to develop genomic medicine in Mexico.

Authors:  Irma Silva-Zolezzi; Alfredo Hidalgo-Miranda; Jesus Estrada-Gil; Juan Carlos Fernandez-Lopez; Laura Uribe-Figueroa; Alejandra Contreras; Eros Balam-Ortiz; Laura del Bosque-Plata; David Velazquez-Fernandez; Cesar Lara; Rodrigo Goya; Enrique Hernandez-Lemus; Carlos Davila; Eduardo Barrientos; Santiago March; Gerardo Jimenez-Sanchez
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-11       Impact factor: 11.205

5.  Ancestral genetic legacy of the extant population of Argentina as predicted by autosomal and X-chromosomal DIPs.

Authors:  M Caputo; M A Amador; A Sala; A Riveiro Dos Santos; S Santos; D Corach
Journal:  Mol Genet Genomics       Date:  2021-02-13       Impact factor: 3.291

Review 6.  New approaches to disease mapping in admixed populations.

Authors:  Michael F Seldin; Bogdan Pasaniuc; Alkes L Price
Journal:  Nat Rev Genet       Date:  2011-06-28       Impact factor: 53.242

7.  Mathematical properties of Fst between admixed populations and their parental source populations.

Authors:  Simina M Boca; Noah A Rosenberg
Journal:  Theor Popul Biol       Date:  2011-05-25       Impact factor: 1.570

Review 8.  Genome-wide association studies in diverse populations.

Authors:  Noah A Rosenberg; Lucy Huang; Ethan M Jewett; Zachary A Szpiech; Ivana Jankovic; Michael Boehnke
Journal:  Nat Rev Genet       Date:  2010-05       Impact factor: 53.242

9.  Visualizing chromosome mosaicism and detecting ethnic outliers by the method of "rare" heterozygotes and homozygotes (RHH).

Authors:  Ralph E McGinnis; Panos Deloukas; William M McLaren; Michael Inouye
Journal:  Hum Mol Genet       Date:  2010-03-08       Impact factor: 6.150

Review 10.  Evidence for a genetic component for substance dependence in Native Americans.

Authors:  Cindy L Ehlers; Ian R Gizer
Journal:  Am J Psychiatry       Date:  2013-02       Impact factor: 18.112

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