Literature DB >> 21709689

New approaches to disease mapping in admixed populations.

Michael F Seldin1, Bogdan Pasaniuc, Alkes L Price.   

Abstract

Admixed populations such as African Americans and Hispanic Americans are often medically underserved and bear a disproportionately high burden of disease. Owing to the diversity of their genomes, these populations have both advantages and disadvantages for genetic studies of complex phenotypes. Advances in statistical methodologies that can infer genetic contributions from ancestral populations may yield new insights into the aetiology of disease and may contribute to the applicability of genomic medicine to these admixed population groups.

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Year:  2011        PMID: 21709689      PMCID: PMC3142784          DOI: 10.1038/nrg3002

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  43 in total

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Authors:  Shuhua Xu; Wei Huang; Ji Qian; Li Jin
Journal:  Am J Hum Genet       Date:  2008-03-20       Impact factor: 11.025

2.  Estimating local ancestry in admixed populations.

Authors:  Sriram Sankararaman; Srinath Sridhar; Gad Kimmel; Eran Halperin
Journal:  Am J Hum Genet       Date:  2008-02       Impact factor: 11.025

3.  Genetic architecture of complex traits: large phenotypic effects and pervasive epistasis.

Authors:  Haifeng Shao; Lindsay C Burrage; David S Sinasac; Annie E Hill; Sheila R Ernest; William O'Brien; Hayden-William Courtland; Karl J Jepsen; Andrew Kirby; E J Kulbokas; Mark J Daly; Karl W Broman; Eric S Lander; Joseph H Nadeau
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-09       Impact factor: 11.205

4.  FGFR2 variants and breast cancer risk: fine-scale mapping using African American studies and analysis of chromatin conformation.

Authors:  Miriam S Udler; Kerstin B Meyer; Karen A Pooley; Eric Karlins; Jeffery P Struewing; Jinghui Zhang; David R Doody; Stewart MacArthur; Jonathan Tyrer; Paul D Pharoah; Robert Luben; Leslie Bernstein; Laurence N Kolonel; Brian E Henderson; Loic Le Marchand; Giske Ursin; Michael F Press; Paul Brennan; Suleeporn Sangrajrang; Valerie Gaborieau; Fabrice Odefrey; Chen-Yang Shen; Pei-Ei Wu; Hui-Chun Wang; Daehee Kang; Keun-Young Yoo; Dong-Young Noh; Sei-Hyun Ahn; Bruce A J Ponder; Christopher A Haiman; Kathleen E Malone; Alison M Dunning; Elaine A Ostrander; Douglas F Easton
Journal:  Hum Mol Genet       Date:  2009-02-17       Impact factor: 6.150

5.  Long-range LD can confound genome scans in admixed populations.

Authors:  Alkes L Price; Michael E Weale; Nick Patterson; Simon R Myers; Anna C Need; Kevin V Shianna; Dongliang Ge; Jerome I Rotter; Esther Torres; Kent D Taylor; David B Goldstein; David Reich
Journal:  Am J Hum Genet       Date:  2008-07       Impact factor: 11.025

6.  MYH9 is associated with nondiabetic end-stage renal disease in African Americans.

Authors:  W H Linda Kao; Michael J Klag; Lucy A Meoni; David Reich; Yvette Berthier-Schaad; Man Li; Josef Coresh; Nick Patterson; Arti Tandon; Neil R Powe; Nancy E Fink; John H Sadler; Matthew R Weir; Hanna E Abboud; Sharon G Adler; Jasmin Divers; Sudha K Iyengar; Barry I Freedman; Paul L Kimmel; William C Knowler; Orly F Kohn; Kristopher Kramp; David J Leehey; Susanne B Nicholas; Madeleine V Pahl; Jeffrey R Schelling; John R Sedor; Denyse Thornley-Brown; Cheryl A Winkler; Michael W Smith; Rulan S Parekh
Journal:  Nat Genet       Date:  2008-09-14       Impact factor: 38.330

7.  Admixture mapping of white cell count: genetic locus responsible for lower white blood cell count in the Health ABC and Jackson Heart studies.

Authors:  Michael A Nalls; James G Wilson; Nick J Patterson; Arti Tandon; Joseph M Zmuda; Scott Huntsman; Melissa Garcia; Donglei Hu; Rongling Li; Brock A Beamer; Kushang V Patel; Ermeg L Akylbekova; Joe C Files; Cheryl L Hardy; Sarah G Buxbaum; Herman A Taylor; David Reich; Tamara B Harris; Elad Ziv
Journal:  Am J Hum Genet       Date:  2008-01       Impact factor: 11.025

8.  Reduced neutrophil count in people of African descent is due to a regulatory variant in the Duffy antigen receptor for chemokines gene.

Authors:  David Reich; Michael A Nalls; W H Linda Kao; Ermeg L Akylbekova; Arti Tandon; Nick Patterson; James Mullikin; Wen-Chi Hsueh; Ching-Yu Cheng; Josef Coresh; Eric Boerwinkle; Man Li; Alicja Waliszewska; Julie Neubauer; Rongling Li; Tennille S Leak; Lynette Ekunwe; Joe C Files; Cheryl L Hardy; Joseph M Zmuda; Herman A Taylor; Elad Ziv; Tamara B Harris; James G Wilson
Journal:  PLoS Genet       Date:  2009-01-30       Impact factor: 5.917

9.  Inference of locus-specific ancestry in closely related populations.

Authors:  Bogdan Pasaniuc; Sriram Sankararaman; Gad Kimmel; Eran Halperin
Journal:  Bioinformatics       Date:  2009-06-15       Impact factor: 6.937

10.  Sensitive detection of chromosomal segments of distinct ancestry in admixed populations.

Authors:  Alkes L Price; Arti Tandon; Nick Patterson; Kathleen C Barnes; Nicholas Rafaels; Ingo Ruczinski; Terri H Beaty; Rasika Mathias; David Reich; Simon Myers
Journal:  PLoS Genet       Date:  2009-06-19       Impact factor: 5.917

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  96 in total

1.  Population genetics models of local ancestry.

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Journal:  Genetics       Date:  2012-04-04       Impact factor: 4.562

2.  Fast and accurate inference of local ancestry in Latino populations.

Authors:  Yael Baran; Bogdan Pasaniuc; Sriram Sankararaman; Dara G Torgerson; Christopher Gignoux; Celeste Eng; William Rodriguez-Cintron; Rocio Chapela; Jean G Ford; Pedro C Avila; Jose Rodriguez-Santana; Esteban Gonzàlez Burchard; Eran Halperin
Journal:  Bioinformatics       Date:  2012-04-11       Impact factor: 6.937

3.  Model-free Estimation of Recent Genetic Relatedness.

Authors:  Matthew P Conomos; Alexander P Reiner; Bruce S Weir; Timothy A Thornton
Journal:  Am J Hum Genet       Date:  2016-01-07       Impact factor: 11.025

4.  Glioma risk associated with extent of estimated European genetic ancestry in African Americans and Hispanics.

Authors:  Quinn T Ostrom; Kathleen M Egan; L Burt Nabors; Travis Gerke; Reid C Thompson; Jeffrey J Olson; Renato LaRocca; Sajeel Chowdhary; Jeanette E Eckel-Passow; Georgina Armstrong; John K Wiencke; Jonine L Bernstein; Elizabeth B Claus; Dora Il'yasova; Christoffer Johansen; Daniel H Lachance; Rose K Lai; Ryan T Merrell; Sara H Olson; Siegal Sadetzki; Joellen M Schildkraut; Sanjay Shete; Richard S Houlston; Robert B Jenkins; Margaret R Wrensch; Beatrice Melin; Christopher I Amos; Jason T Huse; Jill S Barnholtz-Sloan; Melissa L Bondy
Journal:  Int J Cancer       Date:  2019-04-22       Impact factor: 7.396

5.  Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans.

Authors:  Chengrui Huang; Talin Haritunians; David T Okou; Dermot P B McGovern; Steven R Brant; Subra Kugathasan; David J Cutler; Michael E Zwick; Kent D Taylor; Lisa W Datta; Joseph C Maranville; Zhenqiu Liu; Shannon Ellis; Pankaj Chopra; Jonathan S Alexander; Robert N Baldassano; Raymond K Cross; Themistocles Dassopoulos; Tanvi A Dhere; Richard H Duerr; John S Hanson; Jason K Hou; Sunny Z Hussain; Kim L Isaacs; Kelly E Kachelries; Howard Kader; Michael D Kappelman; Jeffrey Katz; Richard Kellermayer; Barbara S Kirschner; John F Kuemmerle; Archana Kumar; John H Kwon; Mark Lazarev; Peter Mannon; Dedrick E Moulton; Bankole O Osuntokun; Ashish Patel; John D Rioux; Jerome I Rotter; Shehzad Saeed; Ellen J Scherl; Mark S Silverberg; Ann Silverman; Stephan R Targan; John F Valentine; Ming-Hsi Wang; Claire L Simpson; S Louis Bridges; Robert P Kimberly; Stephen S Rich; Judy H Cho; Anna Di Rienzo; Linda W H Kao
Journal:  Gastroenterology       Date:  2015-08-14       Impact factor: 22.682

Review 6.  Evolutionary genomics of dog domestication.

Authors:  Robert K Wayne; Bridgett M vonHoldt
Journal:  Mamm Genome       Date:  2012-01-22       Impact factor: 2.957

7.  Enhanced localization of genetic samples through linkage-disequilibrium correction.

Authors:  Yael Baran; Inés Quintela; Angel Carracedo; Bogdan Pasaniuc; Eran Halperin
Journal:  Am J Hum Genet       Date:  2013-05-30       Impact factor: 11.025

8.  Distribution of ancestral chromosomal segments in admixed genomes and its implications for inferring population history and admixture mapping.

Authors:  Wenfei Jin; Ran Li; Ying Zhou; Shuhua Xu
Journal:  Eur J Hum Genet       Date:  2013-11-20       Impact factor: 4.246

9.  Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.

Authors:  Emile R Chimusa; Noah Zaitlen; Michelle Daya; Marlo Möller; Paul D van Helden; Nicola J Mulder; Alkes L Price; Eileen G Hoal
Journal:  Hum Mol Genet       Date:  2013-09-20       Impact factor: 6.150

10.  Accurate local-ancestry inference in exome-sequenced admixed individuals via off-target sequence reads.

Authors:  Youna Hu; Cristen Willer; Xiaowei Zhan; Hyun Min Kang; Gonçalo R Abecasis
Journal:  Am J Hum Genet       Date:  2013-11-07       Impact factor: 11.025

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