Literature DB >> 20466090

Inferring genetic ancestry: opportunities, challenges, and implications.

Charmaine D Royal1, John Novembre, Stephanie M Fullerton, David B Goldstein, Jeffrey C Long, Michael J Bamshad, Andrew G Clark.   

Abstract

Increasing public interest in direct-to-consumer (DTC) genetic ancestry testing has been accompanied by growing concern about issues ranging from the personal and societal implications of the testing to the scientific validity of ancestry inference. The very concept of "ancestry" is subject to misunderstanding in both the general and scientific communities. What do we mean by ancestry? How exactly is ancestry measured? How far back can such ancestry be defined and by which genetic tools? How do we validate inferences about ancestry in genetic research? What are the data that demonstrate our ability to do this correctly? What can we say and what can we not say from our research findings and the test results that we generate? This white paper from the American Society of Human Genetics (ASHG) Ancestry and Ancestry Testing Task Force builds upon the 2008 ASHG Ancestry Testing Summary Statement in providing a more in-depth analysis of key scientific and non-scientific aspects of genetic ancestry inference in academia and industry. It culminates with recommendations for advancing the current debate and facilitating the development of scientifically based, ethically sound, and socially attentive guidelines concerning the use of these continually evolving technologies. Copyright (c) 2010 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20466090      PMCID: PMC2869013          DOI: 10.1016/j.ajhg.2010.03.011

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  90 in total

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Authors:  M G Thomas; T Parfitt; D A Weiss; K Skorecki; J F Wilson; M le Roux; N Bradman; D B Goldstein
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3.  A human genome diversity cell line panel.

Authors:  Howard M Cann; Claudia de Toma; Lucien Cazes; Marie-Fernande Legrand; Valerie Morel; Laurence Piouffre; Julia Bodmer; Walter F Bodmer; Batsheva Bonne-Tamir; Anne Cambon-Thomsen; Zhu Chen; J Chu; Carlo Carcassi; Licinio Contu; Ruofu Du; Laurent Excoffier; G B Ferrara; Jonathan S Friedlaender; Helena Groot; David Gurwitz; Trefor Jenkins; Rene J Herrera; Xiaoyi Huang; Judith Kidd; Kenneth K Kidd; Andre Langaney; Alice A Lin; S Qasim Mehdi; Peter Parham; Alberto Piazza; Maria Pia Pistillo; Yaping Qian; Qunfang Shu; Jiujin Xu; S Zhu; James L Weber; Henry T Greely; Marcus W Feldman; Gilles Thomas; Jean Dausset; L Luca Cavalli-Sforza
Journal:  Science       Date:  2002-04-12       Impact factor: 47.728

4.  Principal components analysis corrects for stratification in genome-wide association studies.

Authors:  Alkes L Price; Nick J Patterson; Robert M Plenge; Michael E Weinblatt; Nancy A Shadick; David Reich
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5.  Admixture mapping identifies 8q24 as a prostate cancer risk locus in African-American men.

Authors:  Matthew L Freedman; Christopher A Haiman; Nick Patterson; Gavin J McDonald; Arti Tandon; Alicja Waliszewska; Kathryn Penney; Robert G Steen; Kristin Ardlie; Esther M John; Ingrid Oakley-Girvan; Alice S Whittemore; Kathleen A Cooney; Sue A Ingles; David Altshuler; Brian E Henderson; David Reich
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-31       Impact factor: 11.205

Review 6.  Positive natural selection in the human lineage.

Authors:  P C Sabeti; S F Schaffner; B Fry; J Lohmueller; P Varilly; O Shamovsky; A Palma; T S Mikkelsen; D Altshuler; E S Lander
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7.  Technical and policy approaches to balancing patient privacy and data sharing in clinical and translational research.

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Journal:  J Investig Med       Date:  2010-01       Impact factor: 2.895

8.  Admixture mapping of quantitative trait loci for BMI in African Americans: evidence for loci on chromosomes 3q, 5q, and 15q.

Authors:  Analabha Basu; Hua Tang; Donna Arnett; C Charles Gu; Tom Mosley; Sharon Kardia; Amy Luke; Bamidele Tayo; Richard Cooper; Xiaofeng Zhu; Neil Risch
Journal:  Obesity (Silver Spring)       Date:  2009-02-19       Impact factor: 5.002

9.  Where west meets east: the complex mtDNA landscape of the southwest and Central Asian corridor.

Authors:  Lluis Quintana-Murci; Raphaelle Chaix; R Spencer Wells; Doron M Behar; Hamid Sayar; Rosaria Scozzari; Chiara Rengo; Nadia Al-Zahery; Ornella Semino; A Silvana Santachiara-Benerecetti; Alfredo Coppa; Qasim Ayub; Aisha Mohyuddin; Chris Tyler-Smith; S Qasim Mehdi; Antonio Torroni; Ken McElreavey
Journal:  Am J Hum Genet       Date:  2004-04-07       Impact factor: 11.025

10.  Population structure and eigenanalysis.

Authors:  Nick Patterson; Alkes L Price; David Reich
Journal:  PLoS Genet       Date:  2006-12       Impact factor: 5.917

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  74 in total

1.  Consistency of genome-wide associations across major ancestral groups.

Authors:  Evangelia E Ntzani; George Liberopoulos; Teri A Manolio; John P A Ioannidis
Journal:  Hum Genet       Date:  2011-12-20       Impact factor: 4.132

2.  Direct-to-Consumer Racial Admixture Tests and Beliefs About Essential Racial Differences.

Authors:  Jo C Phelan; Bruce G Link; Sarah Zelner; Lawrence H Yang
Journal:  Soc Psychol Q       Date:  2014-09-01

3.  Attitudes on DNA ancestry tests.

Authors:  Jennifer K Wagner; Kenneth M Weiss
Journal:  Hum Genet       Date:  2011-06-23       Impact factor: 4.132

4.  2010 Presidential Address: Culture: the silent language geneticists must learn--genetic research with indigenous populations.

Authors:  Roderick R McInnes
Journal:  Am J Hum Genet       Date:  2011-03-11       Impact factor: 11.025

Review 5.  Direct-to-consumer personalized genomic testing.

Authors:  Cinnamon S Bloss; Burcu F Darst; Eric J Topol; Nicholas J Schork
Journal:  Hum Mol Genet       Date:  2011-08-09       Impact factor: 6.150

6.  The molecular reinscription of race: a comment on "Genetic bio-ancestry and social construction of racial classification in social surveys in the contemporary United States".

Authors:  Reanne Frank
Journal:  Demography       Date:  2014-12

7.  Recognizing a small amount of superficial genetic differences across African, European and Asian Americans helps understand social construction of race.

Authors:  Guang Guo; Yilan Fu; Hedwig Lee; Tianji Cai; Yi Li; Kathleen Mullan Harris
Journal:  Demography       Date:  2014-12

8.  Estimates of continental ancestry vary widely among individuals with the same mtDNA haplogroup.

Authors:  Leslie S Emery; Kevin M Magnaye; Abigail W Bigham; Joshua M Akey; Michael J Bamshad
Journal:  Am J Hum Genet       Date:  2015-01-22       Impact factor: 11.025

9.  Barriers and Strategies Related to Qualitative Research on Genetic Ancestry Testing in Indigenous Communities.

Authors:  Jessica W Blanchard; Gloria Tallbull; Chantelle Wolpert; Jill Powell; Morris W Foster; Charmaine Royal
Journal:  J Empir Res Hum Res Ethics       Date:  2017-04-23       Impact factor: 1.742

Review 10.  Evolving approaches to the ethical management of genomic data.

Authors:  Jean E McEwen; Joy T Boyer; Kathie Y Sun
Journal:  Trends Genet       Date:  2013-02-28       Impact factor: 11.639

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