Literature DB >> 17463248

A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.

Laura J Scott1, Karen L Mohlke, Lori L Bonnycastle, Cristen J Willer, Yun Li, William L Duren, Michael R Erdos, Heather M Stringham, Peter S Chines, Anne U Jackson, Ludmila Prokunina-Olsson, Chia-Jen Ding, Amy J Swift, Narisu Narisu, Tianle Hu, Randall Pruim, Rui Xiao, Xiao-Yi Li, Karen N Conneely, Nancy L Riebow, Andrew G Sprau, Maurine Tong, Peggy P White, Kurt N Hetrick, Michael W Barnhart, Craig W Bark, Janet L Goldstein, Lee Watkins, Fang Xiang, Jouko Saramies, Thomas A Buchanan, Richard M Watanabe, Timo T Valle, Leena Kinnunen, Gonçalo R Abecasis, Elizabeth W Pugh, Kimberly F Doheny, Richard N Bergman, Jaakko Tuomilehto, Francis S Collins, Michael Boehnke.   

Abstract

Identifying the genetic variants that increase the risk of type 2 diabetes (T2D) in humans has been a formidable challenge. Adopting a genome-wide association strategy, we genotyped 1161 Finnish T2D cases and 1174 Finnish normal glucose-tolerant (NGT) controls with >315,000 single-nucleotide polymorphisms (SNPs) and imputed genotypes for an additional >2 million autosomal SNPs. We carried out association analysis with these SNPs to identify genetic variants that predispose to T2D, compared our T2D association results with the results of two similar studies, and genotyped 80 SNPs in an additional 1215 Finnish T2D cases and 1258 Finnish NGT controls. We identify T2D-associated variants in an intergenic region of chromosome 11p12, contribute to the identification of T2D-associated variants near the genes IGF2BP2 and CDKAL1 and the region of CDKN2A and CDKN2B, and confirm that variants near TCF7L2, SLC30A8, HHEX, FTO, PPARG, and KCNJ11 are associated with T2D risk. This brings the number of T2D loci now confidently identified to at least 10.

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Year:  2007        PMID: 17463248      PMCID: PMC3214617          DOI: 10.1126/science.1142382

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  28 in total

1.  Hex homeobox gene-dependent tissue positioning is required for organogenesis of the ventral pancreas.

Authors:  Roque Bort; Juan Pedro Martinez-Barbera; Rosa S P Beddington; Kenneth S Zaret
Journal:  Development       Date:  2004-01-21       Impact factor: 6.868

2.  A large set of Finnish affected sibling pair families with type 2 diabetes suggests susceptibility loci on chromosomes 6, 11, and 14.

Authors:  Kaisa Silander; Laura J Scott; Timo T Valle; Karen L Mohlke; Heather M Stringham; Kerry R Wiles; William L Duren; Kimberly F Doheny; Elizabeth W Pugh; Peter Chines; Narisu Narisu; Peggy P White; Tasha E Fingerlin; Anne U Jackson; Chun Li; Soumitra Ghosh; Victoria L Magnuson; Kimberly Colby; Michael R Erdos; Jason E Hill; Pablo Hollstein; Kathleen M Humphreys; Roshni A Kasad; Jessica Lambert; Konstantinos N Lazaridis; George Lin; Anabelle Morales-Mena; Kristin Patzkowski; Carrie Pfahl; Rachel Porter; David Rha; Leonid Segal; Yong D Suh; Jason Tovar; Arun Unni; Christian Welch; Julie A Douglas; Michael P Epstein; Elizabeth R Hauser; William Hagopian; Thomas A Buchanan; Richard M Watanabe; Richard N Bergman; Jaakko Tuomilehto; Francis S Collins; Michael Boehnke
Journal:  Diabetes       Date:  2004-03       Impact factor: 9.461

3.  Glucose-induced expression of the cyclin-dependent protein kinase 5 activator p35 involved in Alzheimer's disease regulates insulin gene transcription in pancreatic beta-cells.

Authors:  Mariano Ubeda; Daniel M Kemp; Joel F Habener
Journal:  Endocrinology       Date:  2004-02-19       Impact factor: 4.736

Review 4.  Mapping genes in diabetes. Genetic epidemiological perspective.

Authors:  S S Rich
Journal:  Diabetes       Date:  1990-11       Impact factor: 9.461

5.  The common PPARgamma Pro12Ala polymorphism is associated with decreased risk of type 2 diabetes.

Authors:  D Altshuler; J N Hirschhorn; M Klannemark; C M Lindgren; M C Vohl; J Nemesh; C R Lane; S F Schaffner; S Bolk; C Brewer; T Tuomi; D Gaudet; T J Hudson; M Daly; L Groop; E S Lander
Journal:  Nat Genet       Date:  2000-09       Impact factor: 38.330

6.  Identification and cloning of a beta-cell-specific zinc transporter, ZnT-8, localized into insulin secretory granules.

Authors:  Fabrice Chimienti; Séverine Devergnas; Alain Favier; Michel Seve
Journal:  Diabetes       Date:  2004-09       Impact factor: 9.461

7.  Global prevalence of diabetes: estimates for the year 2000 and projections for 2030.

Authors:  Sarah Wild; Gojka Roglic; Anders Green; Richard Sicree; Hilary King
Journal:  Diabetes Care       Date:  2004-05       Impact factor: 19.112

8.  Large-scale association studies of variants in genes encoding the pancreatic beta-cell KATP channel subunits Kir6.2 (KCNJ11) and SUR1 (ABCC8) confirm that the KCNJ11 E23K variant is associated with type 2 diabetes.

Authors:  Anna L Gloyn; Michael N Weedon; Katharine R Owen; Martina J Turner; Bridget A Knight; Graham Hitman; Mark Walker; Jonathan C Levy; Mike Sampson; Stephanie Halford; Mark I McCarthy; Andrew T Hattersley; Timothy M Frayling
Journal:  Diabetes       Date:  2003-02       Impact factor: 9.461

9.  Identification of a neuronal Cdk5 activator-binding protein as Cdk5 inhibitor.

Authors:  Yick-Pang Ching; Andy S H Pang; Wing-Ho Lam; Robert Z Qi; Jerry H Wang
Journal:  J Biol Chem       Date:  2002-03-06       Impact factor: 5.157

10.  Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.

Authors:  Eleftheria Zeggini; Michael N Weedon; Cecilia M Lindgren; Timothy M Frayling; Katherine S Elliott; Hana Lango; Nicholas J Timpson; John R B Perry; Nigel W Rayner; Rachel M Freathy; Jeffrey C Barrett; Beverley Shields; Andrew P Morris; Sian Ellard; Christopher J Groves; Lorna W Harries; Jonathan L Marchini; Katharine R Owen; Beatrice Knight; Lon R Cardon; Mark Walker; Graham A Hitman; Andrew D Morris; Alex S F Doney; Mark I McCarthy; Andrew T Hattersley
Journal:  Science       Date:  2007-04-26       Impact factor: 47.728

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  1270 in total

1.  Variation in CDKN2A at 9p21.3 influences childhood acute lymphoblastic leukemia risk.

Authors:  Amy L Sherborne; Fay J Hosking; Rashmi B Prasad; Rajiv Kumar; Rolf Koehler; Jayaram Vijayakrishnan; Elli Papaemmanuil; Claus R Bartram; Martin Stanulla; Martin Schrappe; Andreas Gast; Sara E Dobbins; Yussanne Ma; Eamonn Sheridan; Malcolm Taylor; Sally E Kinsey; Tracey Lightfoot; Eve Roman; Julie A E Irving; James M Allan; Anthony V Moorman; Christine J Harrison; Ian P Tomlinson; Sue Richards; Martin Zimmermann; Csaba Szalai; Agnes F Semsei; Daniel J Erdelyi; Maja Krajinovic; Daniel Sinnett; Jasmine Healy; Anna Gonzalez Neira; Norihiko Kawamata; Seishi Ogawa; H Phillip Koeffler; Kari Hemminki; Mel Greaves; Richard S Houlston
Journal:  Nat Genet       Date:  2010-05-09       Impact factor: 38.330

2.  Replication in genome-wide association studies.

Authors:  Peter Kraft; Eleftheria Zeggini; John P A Ioannidis
Journal:  Stat Sci       Date:  2009-11-01       Impact factor: 2.901

3.  What is a functional locus? Understanding the genetic basis of complex phenotypic traits.

Authors:  Edward A Ruiz-Narváez
Journal:  Med Hypotheses       Date:  2011-02-01       Impact factor: 1.538

4.  The risk allele load accelerates the age-dependent decline in beta cell function.

Authors:  A Haupt; H Staiger; S A Schäfer; K Kirchhoff; M Guthoff; F Machicao; B Gallwitz; N Stefan; H-U Häring; A Fritsche
Journal:  Diabetologia       Date:  2009-01-27       Impact factor: 10.122

5.  Genotype-based matching to correct for population stratification in large-scale case-control genetic association studies.

Authors:  Weihua Guan; Liming Liang; Michael Boehnke; Gonçalo R Abecasis
Journal:  Genet Epidemiol       Date:  2009-09       Impact factor: 2.135

6.  Inactivation of the Fto gene protects from obesity.

Authors:  Julia Fischer; Linda Koch; Christian Emmerling; Jeanette Vierkotten; Thomas Peters; Jens C Brüning; Ulrich Rüther
Journal:  Nature       Date:  2009-02-22       Impact factor: 49.962

Review 7.  New insights into the genetics of addiction.

Authors:  Ming D Li; Margit Burmeister
Journal:  Nat Rev Genet       Date:  2009-04       Impact factor: 53.242

Review 8.  Linking diabetic vascular complications with LncRNAs.

Authors:  Amy Leung; Vishnu Amaram; Rama Natarajan
Journal:  Vascul Pharmacol       Date:  2018-02-03       Impact factor: 5.773

Review 9.  Epigenetics and obesity.

Authors:  Reinhard Stöger
Journal:  Pharmacogenomics       Date:  2008-12       Impact factor: 2.533

10.  Associations of genetic variants in/near body mass index-associated genes with type 2 diabetes: a systematic meta-analysis.

Authors:  Bo Xi; Fumihiko Takeuchi; Aline Meirhaeghe; Norihiro Kato; John C Chambers; Andrew P Morris; Yoon Shin Cho; Weihua Zhang; Karen L Mohlke; Jaspal S Kooner; Xiao Ou Shu; Hongwei Pan; E Shyong Tai; Haiyan Pan; Jer-Yuarn Wu; Donghao Zhou; Giriraj R Chandak
Journal:  Clin Endocrinol (Oxf)       Date:  2014-03-13       Impact factor: 3.478

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