Literature DB >> 17418442

Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution.

Nicolas Galtier1, Laurent Duret.   

Abstract

The analysis of evolutionary rates is a popular approach to characterizing the effect of natural selection at the molecular level. Sequences contributing to species adaptation are expected to evolve faster than nonfunctional sequences because favourable mutations have a higher fixation probability than neutral ones. Such an accelerated rate of evolution might be due to factors other than natural selection, in particular GC-biased gene conversion. This is true of neutral sequences, but also of constrained sequences, which can be illustrated using the mouse Fxy gene. Several criteria can discriminate between the natural selection and biased gene conversion models. These criteria suggest that the recently reported human accelerated regions are most likely the result of biased gene conversion. We argue that these regions, far from contributing to human adaptation, might represent the Achilles' heel of our genome.

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Year:  2007        PMID: 17418442     DOI: 10.1016/j.tig.2007.03.011

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  105 in total

1.  Detecting positive selection within genomes: the problem of biased gene conversion.

Authors:  Abhirami Ratnakumar; Sylvain Mousset; Sylvain Glémin; Jonas Berglund; Nicolas Galtier; Laurent Duret; Matthew T Webster
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-08-27       Impact factor: 6.237

2.  Surprising fitness consequences of GC-biased gene conversion: I. Mutation load and inbreeding depression.

Authors:  Sylvain Glémin
Journal:  Genetics       Date:  2010-04-26       Impact factor: 4.562

3.  Surprising fitness consequences of GC-biased gene conversion. II. Heterosis.

Authors:  Sylvain Glémin
Journal:  Genetics       Date:  2010-10-18       Impact factor: 4.562

4.  Evolutionary genomics: A positive becomes a negative.

Authors:  Laurence D Hurst
Journal:  Nature       Date:  2009-01-29       Impact factor: 49.962

Review 5.  Great ape genomics.

Authors:  Jeffrey D Wall
Journal:  ILAR J       Date:  2013

6.  A novel test for selection on cis-regulatory elements reveals positive and negative selection acting on mammalian transcriptional enhancers.

Authors:  Justin D Smith; Kimberly F McManus; Hunter B Fraser
Journal:  Mol Biol Evol       Date:  2013-07-30       Impact factor: 16.240

7.  The recombination landscape of the zebra finch Taeniopygia guttata genome.

Authors:  Niclas Backström; Wolfgang Forstmeier; Holger Schielzeth; Harriet Mellenius; Kiwoong Nam; Elisabeth Bolund; Matthew T Webster; Torbjörn Ost; Melanie Schneider; Bart Kempenaers; Hans Ellegren
Journal:  Genome Res       Date:  2010-03-31       Impact factor: 9.043

8.  The correlation between recombination rate and dinucleotide bias in Drosophila melanogaster.

Authors:  Guoqing Liu; Hong Li
Journal:  J Mol Evol       Date:  2008-09-17       Impact factor: 2.395

9.  Measuring the rates of spontaneous mutation from deep and large-scale polymorphism data.

Authors:  Philipp W Messer
Journal:  Genetics       Date:  2009-06-15       Impact factor: 4.562

10.  Fast evolution of core promoters in primate genomes.

Authors:  Han Liang; Yeong-Shin Lin; Wen-Hsiung Li
Journal:  Mol Biol Evol       Date:  2008-03-25       Impact factor: 16.240

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