Literature DB >> 17401203

Crystallization and preliminary X-ray analysis of the reduced Rieske-type [2Fe-2S] ferredoxin derived from Pseudomonas sp. strain KKS102.

Miki Senda1, Shinya Kishigami, Shigenobu Kimura, Toshiya Senda.   

Abstract

The reduced form of BphA3, a Rieske-type [2Fe-2S] ferredoxin component of the biphenyl dioxygenase BphA from Pseudomonas sp. strain KKS102, was crystallized by the sitting-drop vapour-diffusion method under anaerobic conditions. The crystal belongs to space group P3(1)21, with unit-cell parameters a = b = 49.6, c = 171.9 A, and diffracts to a resolution of 1.95 A. A molecular-replacement calculation using oxidized BphA3 as a search model yielded a satisfactory solution.

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Year:  2007        PMID： 17401203      PMCID： PMC2330217          DOI： 10.1107/S1744309107009992

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN： 1744-3091


  10 in total

1.  Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.

Authors:  T Senda; T Yamada; N Sakurai; M Kubota; T Nishizaki; E Masai; M Fukuda; Y Mitsuidagger
Journal:  J Mol Biol       Date:  2000-12-01       Impact factor: 5.469

Review 2.  The electron-transport proteins of hydroxylating bacterial dioxygenases.

Authors:  J R Mason; R Cammack
Journal:  Annu Rev Microbiol       Date:  1992       Impact factor: 15.500

3.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

4.  Crystallization and preliminary X-ray analysis of the Rieske-type [2Fe-2S] ferredoxin component of biphenyl dioxygenase from Pseudomonas sp. strain KKS102.

Authors:  Miki Senda; Shigenobu Kimura; Shinya Kishigami; Toshiya Senda
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-05-31

5.  Complete structure of the 11-subunit bovine mitochondrial cytochrome bc1 complex.

Authors:  S Iwata; J W Lee; K Okada; J K Lee; M Iwata; B Rasmussen; T A Link; S Ramaswamy; B K Jap
Journal:  Science       Date:  1998-07-03       Impact factor: 47.728

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  Tolerance of the Rieske-type [2Fe-2S] cluster in recombinant ferredoxin BphA3 from Pseudomonas sp. KKS102 to histidine ligand mutations.

Authors:  Shigenobu Kimura; Akihiro Kikuchi; Toshiya Senda; Yoshitsugu Shiro; Masao Fukuda
Journal:  Biochem J       Date:  2005-06-15       Impact factor: 3.857

8.  Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102.

Authors:  K Kimbara; T Hashimoto; M Fukuda; T Koana; M Takagi; M Oishi; K Yano
Journal:  J Bacteriol       Date:  1989-05       Impact factor: 3.490

9.  Redox-dependent structural reorganization in putidaredoxin, a vertebrate-type [2Fe-2S] ferredoxin from Pseudomonas putida.

Authors:  Irina F Sevrioukova
Journal:  J Mol Biol       Date:  2005-04-01       Impact factor: 5.469

10.  Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102.

Authors:  Y Kikuchi; Y Nagata; M Hinata; K Kimbara; M Fukuda; K Yano; M Takagi
Journal:  J Bacteriol       Date:  1994-03       Impact factor: 3.490
  10 in total
  7 in total

1.  Crystallization and preliminary crystallographic analysis of D-aspartate oxidase from porcine kidney.

Authors:  Miki Senda; Atsushi Yamamoto; Hiroyuki Tanaka; Tetsuo Ishida; Kihachiro Horiike; Toshiya Senda
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-05-22

2.  Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader.

Authors:  Yoshiyuki Ohtsubo; Fumito Maruyama; Hisayuki Mitsui; Yuji Nagata; Masataka Tsuda
Journal:  J Bacteriol       Date:  2012-12       Impact factor: 3.490

3.  Crystallization and preliminary X-ray analysis of the electron-transfer complex of Rieske-type [2Fe-2S] ferredoxin and NADH-dependent ferredoxin reductase derived from Acidovorax sp. strain KKS102.

Authors:  Miki Senda; Shinya Kishigami; Shigenobu Kimura; Toshiya Senda
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-05-18

4.  Molecular mechanism of strict substrate specificity of an extradiol dioxygenase, DesB, derived from Sphingobium sp. SYK-6.

Authors:  Keisuke Sugimoto; Miki Senda; Daisuke Kasai; Masao Fukuda; Eiji Masai; Toshiya Senda
Journal:  PLoS One       Date:  2014-03-21       Impact factor: 3.240

5.  Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.

Authors:  Yu Nakashima; Takahiro Mori; Hitomi Nakamura; Takayoshi Awakawa; Shotaro Hoshino; Miki Senda; Toshiya Senda; Ikuro Abe
Journal:  Nat Commun       Date:  2018-01-09       Impact factor: 14.919

Review 6.  Anaerobic crystallization of proteins.

Authors:  Miki Senda; Toshiya Senda
Journal:  Biophys Rev       Date:  2017-12-02

7.  Alginate Bioconjugate and Graphene Oxide in Multifunctional Hydrogels for Versatile Biomedical Applications.

Authors:  Giuseppe Cirillo; Elvira Pantuso; Manuela Curcio; Orazio Vittorio; Antonella Leggio; Francesca Iemma; Giovanni De Filpo; Fiore Pasquale Nicoletta
Journal:  Molecules       Date:  2021-03-03       Impact factor: 4.411
  7 in total

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