Literature DB >> 16754990

Crystallization and preliminary X-ray analysis of the Rieske-type [2Fe-2S] ferredoxin component of biphenyl dioxygenase from Pseudomonas sp. strain KKS102.

Miki Senda1, Shigenobu Kimura, Shinya Kishigami, Toshiya Senda.   

Abstract

BphA3, a Rieske-type [2Fe-2S] ferredoxin component of a biphenyl dioxygenase (BphA) from Pseudomonas sp. strain KKS102, was crystallized by the hanging-drop vapour-diffusion method. Two crystal forms were obtained from the same conditions. The form I crystal belongs to space group P2(1)2(1)2, with unit-cell parameters a = 26.3, b = 144.3, c = 61.5 A, and diffracted to 2.45 A resolution. The form II crystal belongs to space group P2(1)2(1)2(1), with unit-cell parameters a = 26.2, b = 121.3, c = 142.7 A, and diffracted to 2.8 A resolution. A molecular-replacement calculation using BphF as a search model yielded a satisfactory solution for both forms.

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Year:  2006        PMID: 16754990      PMCID: PMC2243079          DOI: 10.1107/S1744309106017799

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  9 in total

1.  Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.

Authors:  T Senda; T Yamada; N Sakurai; M Kubota; T Nishizaki; E Masai; M Fukuda; Y Mitsuidagger
Journal:  J Mol Biol       Date:  2000-12-01       Impact factor: 5.469

Review 2.  The electron-transport proteins of hydroxylating bacterial dioxygenases.

Authors:  J R Mason; R Cammack
Journal:  Annu Rev Microbiol       Date:  1992       Impact factor: 15.500

3.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  Tolerance of the Rieske-type [2Fe-2S] cluster in recombinant ferredoxin BphA3 from Pseudomonas sp. KKS102 to histidine ligand mutations.

Authors:  Shigenobu Kimura; Akihiro Kikuchi; Toshiya Senda; Yoshitsugu Shiro; Masao Fukuda
Journal:  Biochem J       Date:  2005-06-15       Impact factor: 3.857

6.  A cluster exposed: structure of the Rieske ferredoxin from biphenyl dioxygenase and the redox properties of Rieske Fe-S proteins.

Authors:  C L Colbert; M M Couture; L D Eltis; J T Bolin
Journal:  Structure       Date:  2000-12-15       Impact factor: 5.006

7.  Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102.

Authors:  K Kimbara; T Hashimoto; M Fukuda; T Koana; M Takagi; M Oishi; K Yano
Journal:  J Bacteriol       Date:  1989-05       Impact factor: 3.490

8.  Redox-dependent structural reorganization in putidaredoxin, a vertebrate-type [2Fe-2S] ferredoxin from Pseudomonas putida.

Authors:  Irina F Sevrioukova
Journal:  J Mol Biol       Date:  2005-04-01       Impact factor: 5.469

9.  Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp. strain RHA1.

Authors:  Yutaka Furusawa; Venugopalan Nagarajan; Masaru Tanokura; Eiji Masai; Masao Fukuda; Toshiya Senda
Journal:  J Mol Biol       Date:  2004-09-17       Impact factor: 5.469

  9 in total
  3 in total

1.  Crystallization and preliminary X-ray analysis of the reduced Rieske-type [2Fe-2S] ferredoxin derived from Pseudomonas sp. strain KKS102.

Authors:  Miki Senda; Shinya Kishigami; Shigenobu Kimura; Toshiya Senda
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-03-12

2.  Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader.

Authors:  Yoshiyuki Ohtsubo; Fumito Maruyama; Hisayuki Mitsui; Yuji Nagata; Masataka Tsuda
Journal:  J Bacteriol       Date:  2012-12       Impact factor: 3.490

Review 3.  Anaerobic crystallization of proteins.

Authors:  Miki Senda; Toshiya Senda
Journal:  Biophys Rev       Date:  2017-12-02
  3 in total

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