Literature DB >> 22684060

Crystallization and preliminary crystallographic analysis of D-aspartate oxidase from porcine kidney.

Miki Senda1, Atsushi Yamamoto, Hiroyuki Tanaka, Tetsuo Ishida, Kihachiro Horiike, Toshiya Senda.   

Abstract

D-Aspartate oxidase (DDO) from porcine kidney was crystallized by the sitting-drop vapour-diffusion method using PEG 8000 as a precipitant. The crystal belonged to space group P2(1), with unit-cell parameters a = 79.38, b = 144.0, c = 80.46 Å, β = 101.1°, and diffracted to 1.80 Å resolution. Molecular-replacement trials using the structure of human D-amino-acid oxidase, which is 42% identical in sequence to DDO, as a search model provided a satisfactory solution.

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Year:  2012        PMID: 22684060      PMCID: PMC3370900          DOI: 10.1107/S1744309112013243

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  16 in total

1.  The kinetic mechanism of beef kidney D-aspartate oxidase.

Authors:  A Negri; V Massey; C H Williams; L M Schopfer
Journal:  J Biol Chem       Date:  1988-09-25       Impact factor: 5.157

2.  Occurrence of D-aspartic acid and N-methyl-D-aspartic acid in rat neuroendocrine tissues and their role in the modulation of luteinizing hormone and growth hormone release.

Authors:  A D'Aniello; M M Di Fiore; G H Fisher; A Milone; A Seleni; S D'Aniello; A F Perna; D Ingrosso
Journal:  FASEB J       Date:  2000-04       Impact factor: 5.191

3.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

4.  Widespread distribution of free D-aspartate in rat periphery.

Authors:  A Hashimoto; T Nishikawa; T Oka; T Hayashi; K Takahashi
Journal:  FEBS Lett       Date:  1993-09-27       Impact factor: 4.124

5.  Crystal structure of D-amino acid oxidase: a case of active site mirror-image convergent evolution with flavocytochrome b2.

Authors:  A Mattevi; M A Vanoni; F Todone; M Rizzi; A Teplyakov; A Coda; M Bolognesi; B Curti
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-23       Impact factor: 11.205

6.  Crystal structure of human D-amino acid oxidase: context-dependent variability of the backbone conformation of the VAAGL hydrophobic stretch located at the si-face of the flavin ring.

Authors:  Tomoya Kawazoe; Hideaki Tsuge; Mirella S Pilone; Kiyoshi Fukui
Journal:  Protein Sci       Date:  2006-11-06       Impact factor: 6.725

7.  The mammalian enzyme which replaces B protein of E. coli quinolinate synthetase is D-aspartate oxidase.

Authors:  S Nasu; F D Wicks; R K Gholson
Journal:  Biochim Biophys Acta       Date:  1982-06-04

8.  D-aspartate regulates melanocortin formation and function: behavioral alterations in D-aspartate oxidase-deficient mice.

Authors:  Alex S Huang; Anne Beigneux; Zachary M Weil; Paul M Kim; Mark E Molliver; Seth Blackshaw; Randy J Nelson; Stephen G Young; Solomon H Snyder
Journal:  J Neurosci       Date:  2006-03-08       Impact factor: 6.167

9.  Embryonic development and postnatal changes in free D-aspartate and D-serine in the human prefrontal cortex.

Authors:  A Hashimoto; S Kumashiro; T Nishikawa; T Oka; K Takahashi; T Mito; S Takashima; N Doi; Y Mizutani; T Yamazaki
Journal:  J Neurochem       Date:  1993-07       Impact factor: 5.372

10.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
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  1 in total

1.  X-ray structure analysis of a unique D-amino-acid oxidase from the thermophilic fungus Rasamsonia emersonii strain YA.

Authors:  Yuya Shimekake; Yuki Hirato; Rikako Funabashi; Sayoko Okazaki; Masaru Goto; Takehiro Furuichi; Hideyuki Suzuki; Yoshio Kera; Shouji Takahashi
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2020-10-23       Impact factor: 1.056

  1 in total

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