Literature DB >> 23209225

Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader.

Yoshiyuki Ohtsubo1, Fumito Maruyama, Hisayuki Mitsui, Yuji Nagata, Masataka Tsuda.   

Abstract

We report the complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl-degrading strain isolated from a soil sample in Tokyo. The genome contains a single circular 5,196,935-bp chromosome and no plasmids.

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Year:  2012        PMID： 23209225      PMCID： PMC3510582          DOI： 10.1128/JB.01848-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  15 in total

1.  BphS, a key transcriptional regulator of bph genes involved in polychlorinated biphenyl/biphenyl degradation in Pseudomonas sp. KKS102.

Authors:  Y Ohtsubo; M Delawary; K Kimbara; M Takagi; A Ohta; Y Nagata
Journal:  J Biol Chem       Date:  2001-07-17       Impact factor: 5.157

2.  Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102.

Authors:  Yoshiyuki Ohtsubo; Hiroyuki Goto; Yuji Nagata; Toshiaki Kudo; Masataka Tsuda
Journal:  Mol Microbiol       Date:  2006-06       Impact factor: 3.501

3.  Expression of the bph genes involved in biphenyl/PCB degradation in Pseudomonas sp. KKS102 induced by the biphenyl degradation intermediate, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid.

Authors:  Y Ohtsubo; Y Nagata; K Kimbara; M Takagi; A Ohta
Journal:  Gene       Date:  2000-10-03       Impact factor: 3.688

4.  Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element.

Authors:  Yoshiyuki Ohtsubo; Yoko Ishibashi; Hideaki Naganawa; Satoshi Hirokawa; Satomi Atobe; Yuji Nagata; Masataka Tsuda
Journal:  J Bacteriol       Date:  2012-06-08       Impact factor: 3.490

5.  Crystallization and preliminary X-ray analysis of the reduced Rieske-type [2Fe-2S] ferredoxin derived from Pseudomonas sp. strain KKS102.

Authors:  Miki Senda; Shinya Kishigami; Shigenobu Kimura; Toshiya Senda
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-03-12

6.  Crystallization and preliminary crystallographic analysis of a 2,3-dihydroxybiphenyl dioxygenase from Pseudomonas sp. strain KKS102 having polychlorinated biphenyl (PCB)-degrading activity.

Authors:  K Sugiyama; H Narita; T Yamamoto; T Senda; K Kimbara; N Inokuchi; M Iwama; M Irie; M Fukuda; K Yano
Journal:  Proteins       Date:  1995-07

7.  Novel approach to the improvement of biphenyl and polychlorinated biphenyl degradation activity: promoter implantation by homologous recombination.

Authors:  Yoshiyuki Ohtsubo; Minoru Shimura; Mina Delawary; Kazuhide Kimbara; Masamichi Takagi; Toshiaki Kudo; Akinori Ohta; Yuji Nagata
Journal:  Appl Environ Microbiol       Date:  2003-01       Impact factor: 4.792

8.  Crystallization and preliminary X-ray analysis of the electron-transfer complex of Rieske-type [2Fe-2S] ferredoxin and NADH-dependent ferredoxin reductase derived from Acidovorax sp. strain KKS102.

Authors:  Miki Senda; Shinya Kishigami; Shigenobu Kimura; Toshiya Senda
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-05-18

9.  Pseudomonas fluorescens KKL101, a benzoic acid degrader in a mixed culture that degrades biphenyl and polychlorinated biphenyls.

Authors:  Y Kikuchi; Y Nagata; Y Ohtsubo; T Koana; M Takagi
Journal:  Biosci Biotechnol Biochem       Date:  1995-12       Impact factor: 2.043

10.  GenomeMatcher: a graphical user interface for DNA sequence comparison.

Authors:  Yoshiyuki Ohtsubo; Wakako Ikeda-Ohtsubo; Yuji Nagata; Masataka Tsuda
Journal:  BMC Bioinformatics       Date:  2008-09-16       Impact factor: 3.169
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  77 in total

1.  Genome-based survey of nonribosomal peptide synthetase and polyketide synthase gene clusters in type strains of the genus Microtetraspora.

Authors:  Hisayuki Komaki; Natsuko Ichikawa; Tomohiko Tamura; Akio Oguchi; Moriyuki Hamada; Nobuyuki Fujita
Journal:  J Antibiot (Tokyo)       Date:  2016-02-17       Impact factor: 2.649

2.  Genome-based analysis of type-I polyketide synthase and nonribosomal peptide synthetase gene clusters in a novel strain taxonomically close to the genus Salinispora.

Authors:  Hisayuki Komaki; Tomohiko Tamura; Natsuko Ichikawa; Akio Oguchi; Moriyuki Hamada; Ken-Ichiro Suzuki; Nobuyuki Fujita
Journal:  J Antibiot (Tokyo)       Date:  2015-07-01       Impact factor: 2.649

3.  The Small Protein HemP Is a Transcriptional Activator for the Hemin Uptake Operon in Burkholderia multivorans ATCC 17616.

Authors:  Takuya Sato; Shouta Nonoyama; Akane Kimura; Yuji Nagata; Yoshiyuki Ohtsubo; Masataka Tsuda
Journal:  Appl Environ Microbiol       Date:  2017-08-01       Impact factor: 4.792

4.  Acidophilic green algal genome provides insights into adaptation to an acidic environment.

Authors:  Shunsuke Hirooka; Yuu Hirose; Yu Kanesaki; Sumio Higuchi; Takayuki Fujiwara; Ryo Onuma; Atsuko Era; Ryudo Ohbayashi; Akihiro Uzuka; Hisayoshi Nozaki; Hirofumi Yoshikawa; Shin-Ya Miyagishima
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-11       Impact factor: 11.205

5.  3-Hydroxypyridine Dehydrogenase HpdA Is Encoded by a Novel Four-Component Gene Cluster and Catalyzes the First Step of 3-Hydroxypyridine Catabolism in Ensifer adhaerens HP1.

Authors:  Haixia Wang; Xiaoyu Wang; Hao Ren; Xuejun Wang; Zhenmei Lu
Journal:  Appl Environ Microbiol       Date:  2020-09-17       Impact factor: 4.792

6.  Novel tripartite aromatic acid transporter essential for terephthalate uptake in Comamonas sp. strain E6.

Authors:  Masaru Hosaka; Naofumi Kamimura; Shotaro Toribami; Kosuke Mori; Daisuke Kasai; Masao Fukuda; Eiji Masai
Journal:  Appl Environ Microbiol       Date:  2013-08-02       Impact factor: 4.792

7.  A Sinorhizobium meliloti RpoH-Regulated Gene Is Involved in Iron-Sulfur Protein Metabolism and Effective Plant Symbiosis under Intrinsic Iron Limitation.

Authors:  Shohei Sasaki; Kiwamu Minamisawa; Hisayuki Mitsui
Journal:  J Bacteriol       Date:  2016-08-11       Impact factor: 3.490

8.  Functional Role of Tyr12 in the Catalytic Activity of Novel Zeta-like Glutathione S-transferase from Acidovorax sp. KKS102.

Authors:  Dayyabu Shehu; Zazali Alias
Journal:  Protein J       Date:  2018-06       Impact factor: 2.371

9.  Bacterial clade with the ribosomal RNA operon on a small plasmid rather than the chromosome.

Authors:  Mizue Anda; Yoshiyuki Ohtsubo; Takashi Okubo; Masayuki Sugawara; Yuji Nagata; Masataka Tsuda; Kiwamu Minamisawa; Hisayuki Mitsui
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-03       Impact factor: 11.205

10.  Complete Genome Sequence of the γ-Hexachlorocyclohexane-Degrading Bacterium Sphingomonas sp. Strain MM-1.

Authors:  M Tabata; Y Ohtsubo; S Ohhata; M Tsuda; Y Nagata
Journal:  Genome Announc       Date:  2013-05-16
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