Literature DB >> 17323948

Cyclic peptoids.

Sung Bin Y Shin1, Barney Yoo, Louis J Todaro, Kent Kirshenbaum.   

Abstract

Foldamers are an intriguing family of biomimetic oligomers that exhibit a propensity to adopt stable secondary structures. N-Substituted glycine oligomers, or "peptoids", are a prototypical example of these foldamer systems and are known to form a helix resembling that of polyproline type I. Ongoing studies seek to improve the stability of peptoid folding and to discover new secondary structure motifs. Here, we report that peptoids undergo highly efficient head-to-tail macrocyclization reactions. A diverse array of peptoid sequences from pentamers to 20mers were converted to macrocyclic products within 5 min at room temperature. The introduction of the covalent constraint enhances conformational ordering, allowing for the crystallization of a cyclic peptoid hexamer and octamer. We present the first X-ray crystallographic structures of peptoid hetero-oligomers, revealing that peptoid macrocycles can form a reverse-turn conformation.

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Year:  2007        PMID: 17323948     DOI: 10.1021/ja066960o

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  44 in total

1.  Construction of peptoids with all trans-amide backbones and peptoid reverse turns via the tactical incorporation of N-aryl side chains capable of hydrogen bonding.

Authors:  Joseph R Stringer; J Aaron Crapster; Ilia A Guzei; Helen E Blackwell
Journal:  J Org Chem       Date:  2010-09-17       Impact factor: 4.354

Review 2.  Sophistication of foldamer form and function in vitro and in vivo.

Authors:  Arjel D Bautista; Cody J Craig; Elizabeth A Harker; Alanna Schepartz
Journal:  Curr Opin Chem Biol       Date:  2007-11-07       Impact factor: 8.822

3.  Unfolding the fold of cyclic cysteine-rich peptides.

Authors:  Amarda Shehu; Lydia E Kavraki; Cecilia Clementi
Journal:  Protein Sci       Date:  2008-03       Impact factor: 6.725

4.  Hydrophobic interactions modulate antimicrobial peptoid selectivity towards anionic lipid membranes.

Authors:  Konstantin Andreev; Michael W Martynowycz; Mia L Huang; Ivan Kuzmenko; Wei Bu; Kent Kirshenbaum; David Gidalevitz
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-04-03       Impact factor: 3.747

5.  Heterocyclic amines for the construction of peptoid oligomers bearing multi-dentate ligands.

Authors:  Galia Maayan; Barney Yoo; Kent Kirshenbaum
Journal:  Tetrahedron Lett       Date:  2008-01-07       Impact factor: 2.415

6.  Multicomponent synthesis of acylated short peptoids with antifungal activity against plant pathogens.

Authors:  Matías D Galetti; Adriana M Cirigliano; Gabriela M Cabrera; Javier A Ramírez
Journal:  Mol Divers       Date:  2011-09-16       Impact factor: 2.943

7.  An efficient computational model to predict protonation at the amide nitrogen and reactivity along the C-N rotational pathway.

Authors:  Roman Szostak; Jeffrey Aubé; Michal Szostak
Journal:  Chem Commun (Camb)       Date:  2015-04-14       Impact factor: 6.222

8.  Novel peptoid building blocks: synthesis of functionalized aromatic helix-inducing submonomers.

Authors:  Jiwon Seo; Annelise E Barron; Ronald N Zuckermann
Journal:  Org Lett       Date:  2010-02-05       Impact factor: 6.005

9.  De novo structure prediction and experimental characterization of folded peptoid oligomers.

Authors:  Glenn L Butterfoss; Barney Yoo; Jonathan N Jaworski; Ilya Chorny; Ken A Dill; Ronald N Zuckermann; Richard Bonneau; Kent Kirshenbaum; Vincent A Voelz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

10.  Synthesis and screening of stereochemically diverse combinatorial libraries of peptide tertiary amides.

Authors:  Yu Gao; Thomas Kodadek
Journal:  Chem Biol       Date:  2013-03-21
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