Literature DB >> 17315059

Density functional theory with dispersion corrections for supramolecular structures, aggregates, and complexes of (bio)organic molecules.

Stefan Grimme1, Jens Antony, Tobias Schwabe, Christian Mück-Lichtenfeld.   

Abstract

Kohn-Sham density functional theory (KS-DFT) is nowadays the most widely used quantum chemical method for electronic structure calculations in chemistry and physics. Its further application in e.g. supramolecular chemistry or biochemistry has mainly been hampered by the inability of almost all current density functionals to describe the ubiquitous attractive long-range van der Waals (dispersion) interactions. We review here methods to overcome this defect, and describe in detail a very successful correction that is based on damped -C(6).R(-6) potentials (DFT-D). As examples we consider the non-covalent inter- and intra-molecular interactions in unsaturated organic molecules (so-called pi-pi stacking in benzenes and dyes), in biologically relevant systems (nucleic acid bases/pairs, proteins, and 'folding' models), between fluorinated molecules, between curved aromatics (corannulene and carbon nanotubes) and small molecules, and for the encapsulation of methane in water clusters. In selected cases we partition the interaction energies into the most relevant contributions from exchange-repulsion, electrostatics, and dispersion in order to provide qualitative insight into the binding character.

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Year:  2007        PMID: 17315059     DOI: 10.1039/b615319b

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  28 in total

1.  The assessment and application of an approach to noncovalent interactions: the energy decomposition analysis (EDA) in combination with DFT of revised dispersion correction (DFT-D3) with Slater-type orbital (STO) basis set.

Authors:  Wei Gao; Huajie Feng; Xiaopeng Xuan; Liuping Chen
Journal:  J Mol Model       Date:  2012-05-29       Impact factor: 1.810

2.  Atomistic simulations of materials for optical chemical sensors: DFT-D calculations of molecular interactions between gas-phase analyte molecules and simple substrate models.

Authors:  Andrey A Safonov; Elena A Rykova; Alexander A Bagaturyants; Vyacheslav A Sazhnikov; Michael V Alfimov
Journal:  J Mol Model       Date:  2010-11-16       Impact factor: 1.810

3.  Modeling the noncovalent interactions at the metabolite binding site in purine riboswitches.

Authors:  Purshotam Sharma; Sitansh Sharma; Mohit Chawla; Abhijit Mitra
Journal:  J Mol Model       Date:  2009-01-10       Impact factor: 1.810

4.  Further analysis and comparative study of intermolecular interactions using dimers from the S22 database.

Authors:  Laszlo Fusti Molnar; Xiao He; Bing Wang; Kenneth M Merz
Journal:  J Chem Phys       Date:  2009-08-14       Impact factor: 3.488

5.  Correlated wavefunction methods in bioinorganic chemistry.

Authors:  Frank Neese; Dimitrios G Liakos; Shengfa Ye
Journal:  J Biol Inorg Chem       Date:  2011-05-05       Impact factor: 3.358

6.  Carbon Nanotube Chemical Sensors.

Authors:  Vera Schroeder; Suchol Savagatrup; Maggie He; Sibo Lin; Timothy M Swager
Journal:  Chem Rev       Date:  2018-09-18       Impact factor: 60.622

7.  Natures of benzene-water and pyrrole-water interactions in the forms of σ and π types: theoretical studies from clusters to liquid mixture.

Authors:  Wei Gao; Jiqing Jiao; Huajie Feng; Xiaopeng Xuan; Liuping Chen
Journal:  J Mol Model       Date:  2012-11-23       Impact factor: 1.810

8.  Parameterization of a B3LYP specific correction for non-covalent interactions and basis set superposition error on a gigantic dataset of CCSD(T) quality non-covalent interaction energies.

Authors:  Severin T Schneebeli; Arteum D Bochevarov; Richard A Friesner
Journal:  J Chem Theory Comput       Date:  2011-03-08       Impact factor: 6.006

9.  Inverting Steric Effects: Using "Attractive" Noncovalent Interactions To Direct Silver-Catalyzed Nitrene Transfer.

Authors:  Minxue Huang; Tzuhsiung Yang; Jonathan D Paretsky; John F Berry; Jennifer M Schomaker
Journal:  J Am Chem Soc       Date:  2017-11-20       Impact factor: 15.419

10.  Effects of cluster formation on spectra of benzo[a]pyrene and benzo[e]pyrene.

Authors:  Silvina E Fioressi; R C Binning; Daniel E Bacelo
Journal:  Chem Phys Lett       Date:  2008-03-20       Impact factor: 2.328

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