Literature DB >> 21541855

Correlated wavefunction methods in bioinorganic chemistry.

Frank Neese1, Dimitrios G Liakos, Shengfa Ye.   

Abstract

In this commentary the challenges faced in the application of wavefunction-based ab initio methods to (open-shell) transition metal complexes of (bio)inorganic interest are briefly touched on. Both single-reference and multireference methods are covered. It is stressed that the generation and nature of the reference wavefunction is a subject of major importance. How erroneous results can be easily obtained even with coupled-cluster theory is illustrated through the example of the septet-quintet separation in iron(IV)-oxo complexes. Second, the interplay between relativistic and correlation effects is important. This is demonstrated with coupled-cluster calculations on models for dinuclear copper active sites, where relativity has a major influence on the relative stabilities of the bis(μ-oxo) and side-on peroxo species.

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Year:  2011        PMID: 21541855     DOI: 10.1007/s00775-011-0787-6

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  34 in total

1.  Systematically convergent basis sets for transition metals. I. All-electron correlation consistent basis sets for the 3d elements Sc-Zn.

Authors:  Nikolai B Balabanov; Kirk A Peterson
Journal:  J Chem Phys       Date:  2005-08-08       Impact factor: 3.488

2.  W4 theory for computational thermochemistry: In pursuit of confident sub-kJ/mol predictions.

Authors:  Amir Karton; Elena Rabinovich; Jan M L Martin; Branko Ruscic
Journal:  J Chem Phys       Date:  2006-10-14       Impact factor: 3.488

3.  Eliminating the domain error in local explicitly correlated second-order Møller-Plesset perturbation theory.

Authors:  Hans-Joachim Werner
Journal:  J Chem Phys       Date:  2008-09-14       Impact factor: 3.488

4.  Accurate ab initio density fitting for multiconfigurational self-consistent field methods.

Authors:  Francesco Aquilante; Thomas Bondo Pedersen; Roland Lindh; Björn Olof Roos; Alfredo Sánchez de Merás; Henrik Koch
Journal:  J Chem Phys       Date:  2008-07-14       Impact factor: 3.488

5.  Calculation of electronic g-tensors using coupled cluster theory.

Authors:  Jürgen Gauss; Mihály Kállay; Frank Neese
Journal:  J Phys Chem A       Date:  2009-10-29       Impact factor: 2.781

6.  Theoretical characterization of end-on and side-on peroxide coordination in ligated Cu2O2 models.

Authors:  Christopher J Cramer; Armagan Kinal; Marta Włoch; Piotr Piecuch; Laura Gagliardi
Journal:  J Phys Chem A       Date:  2006-10-12       Impact factor: 2.781

7.  A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu.

Authors:  Stefan Grimme; Jens Antony; Stephan Ehrlich; Helge Krieg
Journal:  J Chem Phys       Date:  2010-04-21       Impact factor: 3.488

8.  A Local Pair Natural Orbital Coupled Cluster Study of Rh Catalyzed Asymmetric Olefin Hydrogenation.

Authors:  Anakuthil Anoop; Walter Thiel; Frank Neese
Journal:  J Chem Theory Comput       Date:  2010-09-14       Impact factor: 6.006

9.  Reductive half-reaction of aldehyde oxidoreductase toward acetaldehyde: Ab initio and free energy quantum mechanical/molecular mechanical calculations.

Authors:  Johannes M Dieterich; Hans-Joachim Werner; Ricardo A Mata; Sebastian Metz; Walter Thiel
Journal:  J Chem Phys       Date:  2010-01-21       Impact factor: 3.488

10.  A comparison of the thermodynamics of O[bond]O cleavage for dicopper complexes in enzymes and synthetic systems.

Authors:  Per E M Siegbahn
Journal:  J Biol Inorg Chem       Date:  2003-03-28       Impact factor: 3.358

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  6 in total

Review 1.  Copper active sites in biology.

Authors:  Edward I Solomon; David E Heppner; Esther M Johnston; Jake W Ginsbach; Jordi Cirera; Munzarin Qayyum; Matthew T Kieber-Emmons; Christian H Kjaergaard; Ryan G Hadt; Li Tian
Journal:  Chem Rev       Date:  2014-03-03       Impact factor: 60.622

2.  Effect of mutation on the stabilization energy of HIV-1 zinc fingers: a hybrid local self-consistent field/molecular mechanics investigation.

Authors:  Nedjoua Drici; Mohamed Abdelghani Krallafa
Journal:  J Biol Inorg Chem       Date:  2016-11-15       Impact factor: 3.358

3.  Electronic structure analysis of the oxygen-activation mechanism by Fe(II)- and α-ketoglutarate (αKG)-dependent dioxygenases.

Authors:  Shengfa Ye; Christoph Riplinger; Andreas Hansen; Carsten Krebs; J Martin Bollinger; Frank Neese
Journal:  Chemistry       Date:  2012-04-18       Impact factor: 5.236

4.  Formally Copper(III)-Alkylperoxo Complexes as Models of Possible Intermediates in Monooxygenase Enzymes.

Authors:  Benjamin D Neisen; Nicole L Gagnon; Debanjan Dhar; Andrew D Spaeth; William B Tolman
Journal:  J Am Chem Soc       Date:  2017-07-19       Impact factor: 15.419

5.  Development of CHARMM-Compatible Force-Field Parameters for Cobalamin and Related Cofactors from Quantum Mechanical Calculations.

Authors:  Anna Pavlova; Jerry M Parks; James C Gumbart
Journal:  J Chem Theory Comput       Date:  2018-02-01       Impact factor: 6.006

Review 6.  Insights into enzymatic halogenation from computational studies.

Authors:  Hans M Senn
Journal:  Front Chem       Date:  2014-11-11       Impact factor: 5.221

  6 in total

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