Literature DB >> 17307881

A stochastic, cantilever approach to the evaluation of solution phase thermodynamic quantities.

Phillip W Snyder1, Gwangrog Lee, Piotr E Marszalek, Robert L Clark, Eric J Toone.   

Abstract

A cantilever device based on competitive binding of an immobilized receptor to immobilized and soluble ligand and capable of measuring solution-phase thermodynamic quantities is described. Through multiple binary queries, the device stochastically measures the probability of the formation of a bound complex between immobilized protein and immobilized ligand as a function of soluble ligand concentration. The resulting binding isotherm is described by a binding polynomial consisting of the activities of soluble and immobilized ligand and binding constants for the association of immobilized protein with free and immobilized ligand. Evaluation of the polynomial reveals an association constant for the formation of a complex between immobilized ligand and immobilized protein close to that for the formation of complex between soluble protein and soluble ligand. The methodology lays the foundation for construction of practical portable sensing devices.

Year:  2007        PMID: 17307881      PMCID: PMC1815225          DOI: 10.1073/pnas.0606604104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

1.  Piezoelectric Mass-Sensing Devices as Biosensors-An Alternative to Optical Biosensors?

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-11-17       Impact factor: 15.336

2.  Contribution of translational and rotational motions to molecular association in aqueous solution.

Authors:  Y B Yu; P L Privalov; R S Hodges
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

Review 3.  Probing the relation between force--lifetime--and chemistry in single molecular bonds.

Authors:  E Evans
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001

4.  Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality.

Authors:  Jan Liphardt; Sophie Dumont; Steven B Smith; Ignacio Tinoco; Carlos Bustamante
Journal:  Science       Date:  2002-06-07       Impact factor: 47.728

Review 5.  Nano-mechanical methods in biochemistry using atomic force microscopy.

Authors:  Atsushi Ikai; Rehana Afrin; Hiroshi Sekiguchi; Takaharu Okajima; M T Alam; Shuhei Nishida
Journal:  Curr Protein Pept Sci       Date:  2003-06       Impact factor: 3.272

Review 6.  Cantilever-based biosensors.

Authors:  Christiane Ziegler
Journal:  Anal Bioanal Chem       Date:  2004-07-28       Impact factor: 4.142

Review 7.  Nanotechnologies for biomolecular detection and medical diagnostics.

Authors:  Mark Ming-Cheng Cheng; Giovanni Cuda; Yuri L Bunimovich; Marco Gaspari; James R Heath; Haley D Hill; Chad A Mirkin; A Jasper Nijdam; Rosa Terracciano; Thomas Thundat; Mauro Ferrari
Journal:  Curr Opin Chem Biol       Date:  2006-01-18       Impact factor: 8.822

8.  Strength and lifetime of the bond between actin and skeletal muscle alpha-actinin studied with an optical trapping technique.

Authors:  H Miyata; R Yasuda; K Kinosita
Journal:  Biochim Biophys Acta       Date:  1996-05-21

9.  Detection of antigen-antibody binding events with the atomic force microscope.

Authors:  S Allen; X Chen; J Davies; M C Davies; A C Dawkes; J C Edwards; C J Roberts; J Sefton; S J Tendler; P M Williams
Journal:  Biochemistry       Date:  1997-06-17       Impact factor: 3.162

10.  Specific antigen/antibody interactions measured by force microscopy.

Authors:  U Dammer; M Hegner; D Anselmetti; P Wagner; M Dreier; W Huber; H J Güntherodt
Journal:  Biophys J       Date:  1996-05       Impact factor: 4.033

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  4 in total

1.  Single-Molecule Force Spectroscopy of DNA-Based Reversible Polymer Bridges: Surface Robustness and Homogeneity.

Authors:  Michael J Serpe; Jason R Whitehead; Monica Rivera; Robert L Clark; Stephen L Craig
Journal:  Colloids Surf A Physicochem Eng Asp       Date:  2009-08-20       Impact factor: 4.539

2.  Effects of multiple-bond ruptures on kinetic parameters extracted from force spectroscopy measurements: revisiting biotin-streptavidin interactions.

Authors:  Senli Guo; Chad Ray; Andrea Kirkpatrick; Nimit Lad; Boris B Akhremitchev
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

3.  Microcantilever-Based Label-Free Characterization of Temperature-Dependent Biomolecular Affinity Binding.

Authors:  Bin Wang; Fengliang Huang; Thaihuu Nguyen; Yong Xu; Qiao Lin
Journal:  Sens Actuators B Chem       Date:  2013-01-01       Impact factor: 7.460

4.  Nanomechanics of full-length nebulin: an elastic strain gauge in the skeletal muscle sarcomere.

Authors:  Vamsi K Yadavalli; Jeffrey G Forbes; Kuan Wang
Journal:  Langmuir       Date:  2009-07-07       Impact factor: 3.882

  4 in total

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