Literature DB >> 29754461

Computational modeling highlights the role of the disordered Formin Homology 1 domain in profilin-actin transfer.

Brandon G Horan1, Gül H Zerze2, Young C Kim3, Dimitrios Vavylonis1, Jeetain Mittal2.   

Abstract

Formins accelerate actin polymerization, assumed to occur through flexible Formin Homology 1 (FH1) domain-mediated transfer of profilin-actin to the barbed end. To study FH1 properties and address sequence effects, including varying length/distribution of profilin-binding proline-rich motifs, we performed all-atom simulations of a set of representative FH1 domains of formins: mouse mDia1 and mDia2, budding yeast Bni1 and Bnr1, and fission yeast Cdc12, For3, and Fus1. We find FH1 has flexible regions between high-propensity polyproline helix regions. A coarse-grained model retaining sequence specificity, assuming rigid polyproline segments, describes their size. Multiple bound profilins or profilin-actin complexes expand mDia1-FH1, which may be important in cells. Simulations of the barbed end bound to Bni1-FH1-FH2 dimer show that the leading FH1 can better transfer profilin or profilin-actin, with decreasing probability as the distance from FH2 increases.
© 2018 Federation of European Biochemical Societies.

Entities:  

Keywords:  actin polymerization; coarse graining; formins; intrinsically disordered proteins; molecular dynamics; profilin

Mesh:

Substances:

Year:  2018        PMID: 29754461      PMCID: PMC6041121          DOI: 10.1002/1873-3468.13088

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  52 in total

1.  Determinants of Formin Homology 1 (FH1) domain function in actin filament elongation by formins.

Authors:  Naomi Courtemanche; Thomas D Pollard
Journal:  J Biol Chem       Date:  2012-01-14       Impact factor: 5.157

Review 2.  Formin proteins: a domain-based approach.

Authors:  Henry N Higgs
Journal:  Trends Biochem Sci       Date:  2005-06       Impact factor: 13.807

3.  Formin is a processive motor that requires profilin to accelerate actin assembly and associated ATP hydrolysis.

Authors:  Stéphane Romero; Christophe Le Clainche; Dominique Didry; Coumaran Egile; Dominique Pantaloni; Marie-France Carlier
Journal:  Cell       Date:  2004-10-29       Impact factor: 41.582

4.  Tension modulates actin filament polymerization mediated by formin and profilin.

Authors:  Naomi Courtemanche; Ja Yil Lee; Thomas D Pollard; Eric C Greene
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-28       Impact factor: 11.205

5.  Formin mDia1 senses and generates mechanical forces on actin filaments.

Authors:  Antoine Jégou; Marie-France Carlier; Guillaume Romet-Lemonne
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

6.  Structural ensemble of an intrinsically disordered polypeptide.

Authors:  Jeetain Mittal; Tae Hyeon Yoo; George Georgiou; Thomas M Truskett
Journal:  J Phys Chem B       Date:  2012-12-19       Impact factor: 2.991

7.  Protein Composition Determines the Effect of Crowding on the Properties of Disordered Proteins.

Authors:  Cayla M Miller; Young C Kim; Jeetain Mittal
Journal:  Biophys J       Date:  2016-07-12       Impact factor: 4.033

8.  Computer simulations of actin polymerization can explain the barbed-pointed end asymmetry.

Authors:  D Sept; A H Elcock; J A McCammon
Journal:  J Mol Biol       Date:  1999-12-17       Impact factor: 5.469

9.  Free energy surface of an intrinsically disordered protein: comparison between temperature replica exchange molecular dynamics and bias-exchange metadynamics.

Authors:  Gül H Zerze; Cayla M Miller; Daniele Granata; Jeetain Mittal
Journal:  J Chem Theory Comput       Date:  2015-06-09       Impact factor: 6.006

10.  Balanced Protein-Water Interactions Improve Properties of Disordered Proteins and Non-Specific Protein Association.

Authors:  Robert B Best; Wenwei Zheng; Jeetain Mittal
Journal:  J Chem Theory Comput       Date:  2014-10-16       Impact factor: 6.006

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  10 in total

1.  Insights into Actin Polymerization and Nucleation Using a Coarse-Grained Model.

Authors:  Brandon G Horan; Aaron R Hall; Dimitrios Vavylonis
Journal:  Biophys J       Date:  2020-07-08       Impact factor: 4.033

2.  Profilin's Affinity for Formin Regulates the Availability of Filament Ends for Actin Monomer Binding.

Authors:  Mark E Zweifel; Naomi Courtemanche
Journal:  J Mol Biol       Date:  2020-10-22       Impact factor: 5.469

3.  Competition for delivery of profilin-actin to barbed ends limits the rate of formin-mediated actin filament elongation.

Authors:  Mark E Zweifel; Naomi Courtemanche
Journal:  J Biol Chem       Date:  2020-02-19       Impact factor: 5.157

4.  Nucleation limits the lengths of actin filaments assembled by formin.

Authors:  Mark E Zweifel; Laura A Sherer; Biswaprakash Mahanta; Naomi Courtemanche
Journal:  Biophys J       Date:  2021-09-08       Impact factor: 3.699

5.  Profilin choreographs actin and microtubules in cells and cancer.

Authors:  Morgan L Pimm; Jessica Hotaling; Jessica L Henty-Ridilla
Journal:  Int Rev Cell Mol Biol       Date:  2020-07-16       Impact factor: 6.813

6.  Rounding Out the Understanding of ACD Toxicity with the Discovery of Cyclic Forms of Actin Oligomers.

Authors:  Harper Smith; Nick Pinkerton; David B Heisler; Elena Kudryashova; Aaron R Hall; Kelly R Karch; Andrew Norris; Vicki Wysocki; Marcos Sotomayor; Emil Reisler; Dimitrios Vavylonis; Dmitri S Kudryashov
Journal:  Int J Mol Sci       Date:  2021-01-13       Impact factor: 5.923

Review 7.  The Actin Regulators Involved in the Function and Related Diseases of Lymphocytes.

Authors:  Jianxuan Sun; Xingyu Zhong; Xiaoyu Fu; Heather Miller; Pamela Lee; Bing Yu; Chaohong Liu
Journal:  Front Immunol       Date:  2022-03-16       Impact factor: 7.561

8.  A coarse-grained approach to model the dynamics of the actomyosin cortex.

Authors:  Miguel Hernández-Del-Valle; Andrea Valencia-Expósito; Antonio López-Izquierdo; Pau Casanova-Ferrer; Pedro Tarazona; Maria D Martín-Bermudo; David G Míguez
Journal:  BMC Biol       Date:  2022-04-22       Impact factor: 7.364

9.  Alterations to the broad-spectrum formin inhibitor SMIFH2 modulate potency but not specificity.

Authors:  Marina Orman; Maya Landis; Aisha Oza; Deepika Nambiar; Joana Gjeci; Kristen Song; Vivian Huang; Amanda Klestzick; Carla Hachicho; Su Qing Liu; Judith M Kamm; Francesca Bartolini; Jean J Vadakkan; Christian M Rojas; Christina L Vizcarra
Journal:  Sci Rep       Date:  2022-08-08       Impact factor: 4.996

10.  Geometrical Constraints Greatly Hinder Formin mDia1 Activity.

Authors:  Emiko L Suzuki; Jahnavi Chikireddy; Serge Dmitrieff; Bérengère Guichard; Guillaume Romet-Lemonne; Antoine Jégou
Journal:  Nano Lett       Date:  2019-12-13       Impact factor: 11.189

  10 in total

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