Literature DB >> 20639465

From the Cover: Charge interactions can dominate the dimensions of intrinsically disordered proteins.

Sonja Müller-Späth1, Andrea Soranno, Verena Hirschfeld, Hagen Hofmann, Stefan Rüegger, Luc Reymond, Daniel Nettels, Benjamin Schuler.   

Abstract

Many eukaryotic proteins are disordered under physiological conditions, and fold into ordered structures only on binding to their cellular targets. Such intrinsically disordered proteins (IDPs) often contain a large fraction of charged amino acids. Here, we use single-molecule Förster resonance energy transfer to investigate the influence of charged residues on the dimensions of unfolded and intrinsically disordered proteins. We find that, in contrast to the compact unfolded conformations that have been observed for many proteins at low denaturant concentration, IDPs can exhibit a prominent expansion at low ionic strength that correlates with their net charge. Charge-balanced polypeptides, however, can exhibit an additional collapse at low ionic strength, as predicted by polyampholyte theory from the attraction between opposite charges in the chain. The pronounced effect of charges on the dimensions of unfolded proteins has important implications for the cellular functions of IDPs.

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Year:  2010        PMID: 20639465      PMCID: PMC2930438          DOI: 10.1073/pnas.1001743107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  57 in total

1.  Solution structure of the N-terminal zinc binding domain of HIV-1 integrase.

Authors:  M Cai; R Zheng; M Caffrey; R Craigie; G M Clore; A M Gronenborn
Journal:  Nat Struct Biol       Date:  1997-07

2.  Random-coil behavior and the dimensions of chemically unfolded proteins.

Authors:  Jonathan E Kohn; Ian S Millett; Jaby Jacob; Bojan Zagrovic; Thomas M Dillon; Nikolina Cingel; Robin S Dothager; Soenke Seifert; P Thiyagarajan; Tobin R Sosnick; M Zahid Hasan; Vijay S Pande; Ingo Ruczinski; Sebastian Doniach; Kevin W Plaxco
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-16       Impact factor: 11.205

3.  Net charge per residue modulates conformational ensembles of intrinsically disordered proteins.

Authors:  Albert H Mao; Scott L Crick; Andreas Vitalis; Caitlin L Chicoine; Rohit V Pappu
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-19       Impact factor: 11.205

4.  Electrostatic effects on funneled landscapes and structural diversity in denatured protein ensembles.

Authors:  Patrick Weinkam; Ekaterina V Pletneva; Harry B Gray; Jay R Winkler; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-30       Impact factor: 11.205

5.  Prothymosin alpha: a biologically active protein with random coil conformation.

Authors:  K Gast; H Damaschun; K Eckert; K Schulze-Forster; H R Maurer; M Müller-Frohne; D Zirwer; J Czarnecki; G Damaschun
Journal:  Biochemistry       Date:  1995-10-10       Impact factor: 3.162

6.  A simple method for displaying the hydropathic character of a protein.

Authors:  J Kyte; R F Doolittle
Journal:  J Mol Biol       Date:  1982-05-05       Impact factor: 5.469

7.  Natively unfolded human prothymosin alpha adopts partially folded collapsed conformation at acidic pH.

Authors:  V N Uversky; J R Gillespie; I S Millett; A V Khodyakova; A M Vasiliev; T V Chernovskaya; R N Vasilenko; G D Kozlovskaya; D A Dolgikh; A L Fink; S Doniach; V M Abramov
Journal:  Biochemistry       Date:  1999-11-09       Impact factor: 3.162

8.  Protein folding, protein collapse, and tanford's transfer model: lessons from single-molecule FRET.

Authors:  Guy Ziv; Gilad Haran
Journal:  J Am Chem Soc       Date:  2009-03-04       Impact factor: 15.419

9.  Fluorescence correlation spectroscopy shows that monomeric polyglutamine molecules form collapsed structures in aqueous solutions.

Authors:  Scott L Crick; Murali Jayaraman; Carl Frieden; Ronald Wetzel; Rohit V Pappu
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-30       Impact factor: 11.205

Review 10.  Intrinsically disordered proteins in human diseases: introducing the D2 concept.

Authors:  Vladimir N Uversky; Christopher J Oldfield; A Keith Dunker
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

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  200 in total

1.  Determining serpin conformational distributions with single molecule fluorescence.

Authors:  Nicole Mushero; Anne Gershenson
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

2.  Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy.

Authors:  Andrea Soranno; Brigitte Buchli; Daniel Nettels; Ryan R Cheng; Sonja Müller-Späth; Shawn H Pfeil; Armin Hoffmann; Everett A Lipman; Dmitrii E Makarov; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-06       Impact factor: 11.205

3.  Effects of Hofmeister ions on the α-helical structure of proteins.

Authors:  Alvaro H Crevenna; Nikolaus Naredi-Rainer; Don C Lamb; Roland Wedlich-Söldner; Joachim Dzubiella
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

4.  Ionic strength-dependent persistence lengths of single-stranded RNA and DNA.

Authors:  Huimin Chen; Steve P Meisburger; Suzette A Pabit; Julie L Sutton; Watt W Webb; Lois Pollack
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-27       Impact factor: 11.205

5.  Mechanical unfolding of cardiac myosin binding protein-C by atomic force microscopy.

Authors:  Arpád Karsai; Miklós S Z Kellermayer; Samantha P Harris
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

6.  To fold or expand--a charged question.

Authors:  Jeremy L England; Gilad Haran
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-03       Impact factor: 11.205

7.  DNA search efficiency is modulated by charge composition and distribution in the intrinsically disordered tail.

Authors:  Dana Vuzman; Yaakov Levy
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-15       Impact factor: 11.205

8.  Interconnection of salt-induced hydrophobic compaction and secondary structure formation depends on solution conditions: revisiting early events of protein folding at single molecule resolution.

Authors:  Shubhasis Haldar; Krishnananda Chattopadhyay
Journal:  J Biol Chem       Date:  2012-02-02       Impact factor: 5.157

9.  Phase Separation of Toxic Dipeptide Repeat Proteins Related to C9orf72 ALS/FTD.

Authors:  Hamidreza Jafarinia; Erik van der Giessen; Patrick R Onck
Journal:  Biophys J       Date:  2020-07-16       Impact factor: 4.033

10.  Origin of Internal Friction in Disordered Proteins Depends on Solvent Quality.

Authors:  Wenwei Zheng; Hagen Hofmann; Benjamin Schuler; Robert B Best
Journal:  J Phys Chem B       Date:  2018-10-02       Impact factor: 2.991

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