Literature DB >> 17299055

Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis.

Bernhard M Fuchs1, Stefan Spring, Hanno Teeling, Christian Quast, Jörg Wulf, Martha Schattenhofer, Shi Yan, Steve Ferriera, Justin Johnson, Frank Oliver Glöckner, Rudolf Amann.   

Abstract

Members of the gammaproteobacterial clade NOR5/OM60 regularly form an abundant part, up to 11%, of the bacterioplankton community in coastal systems during the summer months. Here, we report the nearly complete genome sequence of one cultured representative, Congregibacter litoralis strain KT71, isolated from North Sea surface water. Unexpectedly, a complete photosynthesis superoperon, including genes for accessory pigments, was discovered. It has a high sequence similarity to BAC clones from Monterey Bay [Beja O, Suzuki MT, Heidelberg JF, Nelson WC, Preston CM, et al. (2002) Nature 415:630-633], which also share a nearly identical gene arrangement. Although cultures of KT71 show no obvious pigmentation, bacteriochlorophyll a and spirilloxanthin-like carotenoids could be detected by HPLC analysis in cell extracts. The presence of two potential BLUF (blue light using flavin adenine dinucleotide sensors), one of which was found adjacent to the photosynthesis operon in the genome, indicates a light- and redox-dependent regulation of gene expression. Like other aerobic anoxygenic phototrophs (AAnPs), KT71 is able to grow neither anaerobically nor photoautotrophically. Cultivation experiments and genomic evidence show that KT71 needs organic substrates like carboxylic acids, oligopeptides, or fatty acids for growth. The strain grows optimally under microaerobic conditions and actively places itself in a zone of approximately 10% oxygen saturation. The genome analysis of C. litoralis strain KT71 identifies the gammaproteobacterial marine AAnPs, postulated based on BAC sequences, as members of the NOR5/OM60 clade. KT71 enables future experiments investigating the importance of this group of gammaproteobacterial AAnPs in coastal environments.

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Year:  2007        PMID: 17299055      PMCID: PMC1815277          DOI: 10.1073/pnas.0608046104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  58 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  Phylogenetic analysis of the succession of bacterial communities in the Great South Bay (Long Island).

Authors:  K M. Kelly; A Y. Chistoserdov
Journal:  FEMS Microbiol Ecol       Date:  2001-03       Impact factor: 4.194

3.  Bacterial photosynthesis in surface waters of the open ocean.

Authors:  Z S Kolber; C L Van Dover; R A Niederman; P G Falkowski
Journal:  Nature       Date:  2000-09-14       Impact factor: 49.962

4.  Putative novel photosynthetic reaction centre organizations in marine aerobic anoxygenic photosynthetic bacteria: insights from metagenomics and environmental genomics.

Authors:  Natalya Yutin; Oded Béjà
Journal:  Environ Microbiol       Date:  2005-12       Impact factor: 5.491

Review 5.  Aerobic anoxygenic phototrophic bacteria.

Authors:  V V Yurkov; J T Beatty
Journal:  Microbiol Mol Biol Rev       Date:  1998-09       Impact factor: 11.056

6.  Viability and endogenous substrates used during starvation survival of Rhodospirillum rubrum.

Authors:  J A Breznak; C J Potrikus; N Pfennig; J C Ensign
Journal:  J Bacteriol       Date:  1978-05       Impact factor: 3.490

7.  Culturability and In situ abundance of pelagic bacteria from the North Sea.

Authors:  H Eilers; J Pernthaler; F O Glöckner; R Amann
Journal:  Appl Environ Microbiol       Date:  2000-07       Impact factor: 4.792

8.  Diversity of free-living and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA.

Authors:  S G Acinas; J Antón; F Rodríguez-Valera
Journal:  Appl Environ Microbiol       Date:  1999-02       Impact factor: 4.792

9.  TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences.

Authors:  Hanno Teeling; Jost Waldmann; Thierry Lombardot; Margarete Bauer; Frank Oliver Glöckner
Journal:  BMC Bioinformatics       Date:  2004-10-26       Impact factor: 3.169

10.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169

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  44 in total

1.  Genome sequence of strain HIMB55, a novel marine gammaproteobacterium of the OM60/NOR5 clade.

Authors:  Megan J Huggett; Michael S Rappé
Journal:  J Bacteriol       Date:  2012-05       Impact factor: 3.490

2.  Mesocosms of aquatic bacterial communities from the Cuatro Cienegas Basin (Mexico): a tool to test bacterial community response to environmental stress.

Authors:  Silvia Pajares; German Bonilla-Rosso; Michael Travisano; Luis E Eguiarte; Valeria Souza
Journal:  Microb Ecol       Date:  2012-03-30       Impact factor: 4.552

3.  Genome sequences of strains HTCC2148 and HTCC2080, belonging to the OM60/NOR5 clade of the Gammaproteobacteria.

Authors:  J Cameron Thrash; Jang-Cheon Cho; Steve Ferriera; Justin Johnson; Kevin L Vergin; Stephen J Giovannoni
Journal:  J Bacteriol       Date:  2010-05-14       Impact factor: 3.490

4.  Abundance and genetic diversity of aerobic anoxygenic phototrophic bacteria of coastal regions of the pacific ocean.

Authors:  Anna E Ritchie; Zackary I Johnson
Journal:  Appl Environ Microbiol       Date:  2012-02-03       Impact factor: 4.792

5.  The variability of light-harvesting complexes in aerobic anoxygenic phototrophs.

Authors:  Vadim Selyanin; Dzmitry Hauruseu; Michal Koblížek
Journal:  Photosynth Res       Date:  2015-10-19       Impact factor: 3.573

6.  An elusive marine photosynthetic bacterium is finally unveiled.

Authors:  Marcelino T Suzuki; Oded Béjà
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-13       Impact factor: 11.205

Review 7.  The microbial ocean from genomes to biomes.

Authors:  Edward F DeLong
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

8.  Novel halophilic aerobic anoxygenic phototrophs from a Canadian hypersaline spring system.

Authors:  Julius T Csotonyi; Jolantha Swiderski; Erko Stackebrandt; Vladimir V Yurkov
Journal:  Extremophiles       Date:  2008-04-03       Impact factor: 2.395

9.  Coexistence of two different photosynthetic operons in Citromicrobium bathyomarinum JL354 as revealed by whole-genome sequencing.

Authors:  Nianzhi Jiao; Rui Zhang; Qiang Zheng
Journal:  J Bacteriol       Date:  2009-12-04       Impact factor: 3.490

10.  Roseibacterium beibuensis sp. nov., a novel member of roseobacter clade isolated from Beibu Gulf in the South China Sea.

Authors:  Yujiao Mao; Jingjing Wei; Qiang Zheng; Na Xiao; Qipei Li; Yingnan Fu; Yanan Wang; Nianzhi Jiao
Journal:  Curr Microbiol       Date:  2012-07-31       Impact factor: 2.188

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