Literature DB >> 18510501

Synthetic morphology: prospects for engineered, self-constructing anatomies.

Jamie A Davies1.   

Abstract

This paper outlines prospects for applying the emerging techniques of synthetic biology to the field of anatomy, with the aim of programming cells to organize themselves into specific, novel arrangements, structures and tissues. There are two main reasons why developing this hybrid discipline--synthetic morphology--would be useful. The first is that having a way to engineer self-constructing assemblies of cells would provide a powerful means of tissue engineering for clinical use in surgery and regenerative medicine. The second is that construction of simple novel systems according to theories of morphogenesis gained from study of real embryos will provide a means of testing those theories rigorously, something that is very difficult to do by manipulation of complex embryos. This paper sets out the engineering requirements for synthetic morphology, which include the development of a library of sensor modules, regulatory modules and effector modules that can be connected functionally within cells. A substantial number of sensor and regulatory modules already exist and this paper argues that some potential effector modules have already been identified. The necessary library may therefore be within reach. The paper ends by suggesting a set of challenges, ranging from simple to complex, the achievement of which would provide valuable proofs of concept.

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Year:  2008        PMID: 18510501      PMCID: PMC2423395          DOI: 10.1111/j.1469-7580.2008.00896.x

Source DB:  PubMed          Journal:  J Anat        ISSN: 0021-8782            Impact factor:   2.610


  37 in total

1.  Expression of cre recombinase as a reporter of signal transduction in mammalian cells.

Authors:  L C Mattheakis; S E Olivan; J M Dias; J P Northrop
Journal:  Chem Biol       Date:  1999-11

2.  Computational design of receptor and sensor proteins with novel functions.

Authors:  Loren L Looger; Mary A Dwyer; James J Smith; Homme W Hellinga
Journal:  Nature       Date:  2003-05-08       Impact factor: 49.962

3.  Shroom induces apical constriction and is required for hingepoint formation during neural tube closure.

Authors:  Saori L Haigo; Jeffrey D Hildebrand; Richard M Harland; John B Wallingford
Journal:  Curr Biol       Date:  2003-12-16       Impact factor: 10.834

4.  The non-peptidyl fungal metabolite L-783,281 activates TRK neurotrophin receptors.

Authors:  N Wilkie; P B Wingrove; J G Bilsland; L Young; S J Harper; F Hefti; S Ellis; S J Pollack
Journal:  J Neurochem       Date:  2001-09       Impact factor: 5.372

5.  Metabolic replacement of kidney function in uremic animals with a bioartificial kidney containing human cells.

Authors:  H David Humes; William H Fissell; William F Weitzel; Deborah A Buffington; Angela J Westover; Sherrill M MacKay; Jorge M Gutierrez
Journal:  Am J Kidney Dis       Date:  2002-05       Impact factor: 8.860

Review 6.  Concept for modular extracorporeal liver support for the treatment of acute hepatic failure.

Authors:  I M Sauer; P Neuhaus; J C Gerlach
Journal:  Metab Brain Dis       Date:  2002-12       Impact factor: 3.584

7.  BioLogic gates enable logical transcription control in mammalian cells.

Authors:  Beat P Kramer; Cornelius Fischer; Martin Fussenegger
Journal:  Biotechnol Bioeng       Date:  2004-08-20       Impact factor: 4.530

8.  Spatiotemporal control of gene expression with pulse-generating networks.

Authors:  Subhayu Basu; Rishabh Mehreja; Stephan Thiberge; Ming-Tang Chen; Ron Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-19       Impact factor: 11.205

9.  An engineered epigenetic transgene switch in mammalian cells.

Authors:  Beat P Kramer; Alessandro Usseglio Viretta; Marie Daoud-El-Baba; Dominique Aubel; Wilfried Weber; Martin Fussenegger
Journal:  Nat Biotechnol       Date:  2004-06-06       Impact factor: 54.908

10.  Chemokine-like factor 1 is a functional ligand for CC chemokine receptor 4 (CCR4).

Authors:  Ying Wang; Yingmei Zhang; Xue Yang; Wenling Han; Yanan Liu; Qianmei Xu; Rui Zhao; Chunhui Di; Quansheng Song; Dalong Ma
Journal:  Life Sci       Date:  2005-08-30       Impact factor: 5.037

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  30 in total

1.  A "lookup table" schema for synthetic biological patterning.

Authors:  Frederick B Reitz
Journal:  Theory Biosci       Date:  2012-02-17       Impact factor: 1.919

2.  Direct activation of Shroom3 transcription by Pitx proteins drives epithelial morphogenesis in the developing gut.

Authors:  Mei-I Chung; Nanette M Nascone-Yoder; Stephanie A Grover; Thomas A Drysdale; John B Wallingford
Journal:  Development       Date:  2010-04       Impact factor: 6.868

3.  Engineering multicellular systems: using synthetic biology to control tissue self-organization.

Authors:  Marion B Johnson; Alexander R March; Leonardo Morsut
Journal:  Curr Opin Biomed Eng       Date:  2017-12

4.  Synthetic associative learning in engineered multicellular consortia.

Authors:  Javier Macia; Blai Vidiella; Ricard V Solé
Journal:  J R Soc Interface       Date:  2017-04       Impact factor: 4.118

5.  The role of self-organization in developmental evolution.

Authors:  Joseph E Hannon Bozorgmehr
Journal:  Theory Biosci       Date:  2014-04-16       Impact factor: 1.919

6.  Emergence of proto-organisms from bistable stochastic differentiation and adhesion.

Authors:  Salva Duran-Nebreda; Adriano Bonforti; Raúl Montañez; Sergi Valverde; Ricard Solé
Journal:  J R Soc Interface       Date:  2016-04       Impact factor: 4.118

Review 7.  Synthetic transitions: towards a new synthesis.

Authors:  Ricard Solé
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-08-19       Impact factor: 6.237

Review 8.  Unit operations of tissue development: epithelial folding.

Authors:  Jeremiah J Zartman; Stanislav Y Shvartsman
Journal:  Annu Rev Chem Biomol Eng       Date:  2010       Impact factor: 11.059

Review 9.  Synthetic development: building mammalian multicellular structures with artificial genetic programs.

Authors:  Marco Santorelli; Calvin Lam; Leonardo Morsut
Journal:  Curr Opin Biotechnol       Date:  2019-05-23       Impact factor: 9.740

Review 10.  Design principles of regulatory networks: searching for the molecular algorithms of the cell.

Authors:  Wendell A Lim; Connie M Lee; Chao Tang
Journal:  Mol Cell       Date:  2013-01-24       Impact factor: 17.970

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