Literature DB >> 17288404

Stochastic sensing on a modular chip containing a single-ion channel.

Ji Wook Shim1, Li Qun Gu.   

Abstract

Engineered protein channels have many potential applications in biosensing at the single-molecule level. A future generation of biosensor could be an array of target-specific ion channels, where each protein pore acts as a sensor element. An important step toward this goal is to create a portable, durable, single-protein channel-integrated chip device. Here we report a versatile, modular chip that contains a single-ion channel for single-molecular biosensing. The core of the device is a long-lived lipid membrane that has been sandwiched between two air-insulated agarose layers which gel in situ. A single-protein pore embedded in the membrane serves as the sensor element. The modular device is highly portable, allowing a single-ion channel to continuously function following detachment of the chip from the instrument and independent transportation of the device. The chip also exhibits high durability, which is evidenced from long-duration continuous observation of single-channel dynamics. Once engineered protein pores are installed, the chip becomes a robust stochastic sensor for real-time targeting such as detection of the second messenger IP3. This pluggable biochip could be incorporated with many applicable devices, such as a microfluidic system, and be made into a microarray for both biomedical detection and membrane protein research.

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Year:  2007        PMID: 17288404      PMCID: PMC2519144          DOI: 10.1021/ac0614285

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  37 in total

1.  Diffusion of macromolecules in agarose gels: comparison of linear and globular configurations.

Authors:  A Pluen; P A Netti; R K Jain; D A Berk
Journal:  Biophys J       Date:  1999-07       Impact factor: 4.033

2.  Capture of a single molecule in a nanocavity.

Authors:  L Q Gu; S Cheley; H Bayley
Journal:  Science       Date:  2001-01-26       Impact factor: 47.728

3.  Stochastic sensing of organic analytes by a pore-forming protein containing a molecular adapter.

Authors:  L Q Gu; O Braha; S Conlan; S Cheley; H Bayley
Journal:  Nature       Date:  1999-04-22       Impact factor: 49.962

4.  Simultaneous stochastic sensing of divalent metal ions.

Authors:  O Braha; L Q Gu; L Zhou; X Lu; S Cheley; H Bayley
Journal:  Nat Biotechnol       Date:  2000-09       Impact factor: 54.908

5.  Single-molecule covalent chemistry with spatially separated reactants.

Authors:  Tudor Luchian; Seong-Ho Shin; Hagan Bayley
Journal:  Angew Chem Int Ed Engl       Date:  2003-08-18       Impact factor: 15.336

6.  Hydrogel-encapsulated lipid membranes.

Authors:  Tae-Joon Jeon; Noah Malmstadt; Jacob J Schmidt
Journal:  J Am Chem Soc       Date:  2006-01-11       Impact factor: 15.419

7.  Functional subconformations in protein folding: evidence from single-channel experiments.

Authors:  Lisen Kullman; Philip A Gurnev; Mathias Winterhalter; Sergey M Bezrukov
Journal:  Phys Rev Lett       Date:  2006-01-23       Impact factor: 9.161

8.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

9.  Microfabricated teflon membranes for low-noise recordings of ion channels in planar lipid bilayers.

Authors:  Michael Mayer; Jennah K Kriebel; Magdalena T Tosteson; George M Whitesides
Journal:  Biophys J       Date:  2003-10       Impact factor: 4.033

10.  A potassium channel protein encoded by chlorella virus PBCV-1.

Authors:  B Plugge; S Gazzarrini; M Nelson; R Cerana; J L Van Etten; C Derst; D DiFrancesco; A Moroni; G Thiel
Journal:  Science       Date:  2000-03-03       Impact factor: 47.728

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  18 in total

Review 1.  Single molecule sensing by nanopores and nanopore devices.

Authors:  Li-Qun Gu; Ji Wook Shim
Journal:  Analyst       Date:  2009-12-22       Impact factor: 4.616

2.  Encapsulating a single G-quadruplex aptamer in a protein nanocavity.

Authors:  Ji Wook Shim; Li-Qun Gu
Journal:  J Phys Chem B       Date:  2008-06-19       Impact factor: 2.991

Review 3.  Building membrane nanopores.

Authors:  Stefan Howorka
Journal:  Nat Nanotechnol       Date:  2017-07-06       Impact factor: 39.213

Review 4.  Membrane protein-based biosensors.

Authors:  Nobuo Misawa; Toshihisa Osaki; Shoji Takeuchi
Journal:  J R Soc Interface       Date:  2018-04       Impact factor: 4.118

5.  Construction of an aerolysin nanopore in a lipid bilayer for single-oligonucleotide analysis.

Authors:  Chan Cao; Dong-Fang Liao; Jie Yu; He Tian; Yi-Tao Long
Journal:  Nat Protoc       Date:  2017-08-24       Impact factor: 13.491

Review 6.  Aptamer-encoded nanopore for ultrasensitive detection of bioterrorist agent ricin at single-molecule resolution.

Authors:  Li-Qun Gu; Shu Ding; Changlu Gao
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2009

Review 7.  Detection of miRNAs with a nanopore single-molecule counter.

Authors:  Li-Qun Gu; Meni Wanunu; Michael X Wang; Larry McReynolds; Yong Wang
Journal:  Expert Rev Mol Diagn       Date:  2012-07       Impact factor: 5.225

8.  Capturing single molecules of immunoglobulin and ricin with an aptamer-encoded glass nanopore.

Authors:  Shu Ding; Changlu Gao; Li-Qun Gu
Journal:  Anal Chem       Date:  2009-08-15       Impact factor: 6.986

9.  A semi-synthetic ion channel platform for detection of phosphatase and protease activity.

Authors:  Michael X Macrae; Steven Blake; Xiayun Jiang; Ricardo Capone; Daniel J Estes; Michael Mayer; Jerry Yang
Journal:  ACS Nano       Date:  2009-11-24       Impact factor: 15.881

10.  Using ion channel-forming peptides to quantify protein-ligand interactions.

Authors:  Michael Mayer; Vincent Semetey; Irina Gitlin; Jerry Yang; George M Whitesides
Journal:  J Am Chem Soc       Date:  2008-01-08       Impact factor: 15.419

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