Literature DB >> 17238434

Syntactically-informed semantic category recognition in discharge summaries.

Tawanda Sibanda1, Tian He, Peter Szolovits, Ozlem Uzuner.   

Abstract

Semantic category recognition (SCR) contributes to document understanding. Most approaches to SCR fail to make use of syntax. We hypothesize that syntax, if represented appropriately, can improve SCR. We present a statistical semantic category (SC) recognizer trained with syntactic and lexical contextual clues, as well as ontological information from UMLS, to identify eight semantic categories in discharge summaries. Some of our categories, e.g., test results and findings, include complex entries that span multiple phrases. We achieve classification F-measures above 90% for most categories and show that syntactic context is important for SCR.

Mesh:

Year:  2006        PMID: 17238434      PMCID: PMC1839398     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  4 in total

1.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

2.  Indexing UMLS Semantic Types for Medical Question-Answering.

Authors:  Thierry Delbecque; Pierre Jacquemart; Pierre Zweigenbaum
Journal:  Stud Health Technol Inform       Date:  2005

3.  Extracting diagnoses from discharge summaries.

Authors:  William Long
Journal:  AMIA Annu Symp Proc       Date:  2005

4.  A general natural-language text processor for clinical radiology.

Authors:  C Friedman; P O Alderson; J H Austin; J J Cimino; S B Johnson
Journal:  J Am Med Inform Assoc       Date:  1994 Mar-Apr       Impact factor: 4.497

  4 in total
  12 in total

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Journal:  Med Care       Date:  2012-07       Impact factor: 2.983

2.  Semantic relations for problem-oriented medical records.

Authors:  Ozlem Uzuner; Jonathan Mailoa; Russell Ryan; Tawanda Sibanda
Journal:  Artif Intell Med       Date:  2010-06-19       Impact factor: 5.326

3.  Three approaches to automatic assignment of ICD-9-CM codes to radiology reports.

Authors:  Ira Goldstein; Anna Arzrumtsyan; Ozlem Uzuner
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

4.  Machine learning and rule-based approaches to assertion classification.

Authors:  Ozlem Uzuner; Xiaoran Zhang; Tawanda Sibanda
Journal:  J Am Med Inform Assoc       Date:  2008-10-24       Impact factor: 4.497

5.  A study of machine-learning-based approaches to extract clinical entities and their assertions from discharge summaries.

Authors:  Min Jiang; Yukun Chen; Mei Liu; S Trent Rosenbloom; Subramani Mani; Joshua C Denny; Hua Xu
Journal:  J Am Med Inform Assoc       Date:  2011-04-20       Impact factor: 4.497

6.  Recognition and pseudonymisation of medical records for secondary use.

Authors:  Johannes Heurix; Stefan Fenz; Antonio Rella; Thomas Neubauer
Journal:  Med Biol Eng Comput       Date:  2015-06-04       Impact factor: 2.602

7.  Automatic lymphoma classification with sentence subgraph mining from pathology reports.

Authors:  Yuan Luo; Aliyah R Sohani; Ephraim P Hochberg; Peter Szolovits
Journal:  J Am Med Inform Assoc       Date:  2014-01-15       Impact factor: 4.497

8.  Specializing for predicting obesity and its co-morbidities.

Authors:  Ira Goldstein; Ozlem Uzuner
Journal:  J Biomed Inform       Date:  2008-11-11       Impact factor: 6.317

9.  Identifying patient smoking status from medical discharge records.

Authors:  Ozlem Uzuner; Ira Goldstein; Yuan Luo; Isaac Kohane
Journal:  J Am Med Inform Assoc       Date:  2007-10-18       Impact factor: 4.497

10.  Automated de-identification of free-text medical records.

Authors:  Ishna Neamatullah; Margaret M Douglass; Li-wei H Lehman; Andrew Reisner; Mauricio Villarroel; William J Long; Peter Szolovits; George B Moody; Roger G Mark; Gari D Clifford
Journal:  BMC Med Inform Decis Mak       Date:  2008-07-24       Impact factor: 2.796

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