Literature DB >> 19041423

Specializing for predicting obesity and its co-morbidities.

Ira Goldstein1, Ozlem Uzuner.   

Abstract

We present specializing, a method for combining classifiers for multi-class classification. Specializing trains one specialist classifier per class and utilizes each specialist to distinguish that class from all others in a one-versus-all manner. It then supplements the specialist classifiers with a catch-all classifier that performs multi-class classification across all classes. We refer to the resulting combined classifier as a specializing classifier. We develop specializing to classify 16 diseases based on discharge summaries. For each discharge summary, we aim to predict whether each disease is present, absent, or questionable in the patient, or unmentioned in the discharge summary. We treat the classification of each disease as an independent multi-class classification task. For each disease, we develop one specialist classifier for each of the present, absent, questionable, and unmentioned classes; we supplement these specialist classifiers with a catch-all classifier that encompasses all of the classes for that disease. We evaluate specializing on each of the 16 diseases and show that it improves significantly over voting and stacking when used for multi-class classification on our data.

Entities:  

Mesh:

Year:  2008        PMID: 19041423      PMCID: PMC3253373          DOI: 10.1016/j.jbi.2008.11.001

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  8 in total

1.  Use of general-purpose negation detection to augment concept indexing of medical documents: a quantitative study using the UMLS.

Authors:  P G Mutalik; A Deshpande; P M Nadkarni
Journal:  J Am Med Inform Assoc       Date:  2001 Nov-Dec       Impact factor: 4.497

2.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

3.  A simple algorithm for identifying negated findings and diseases in discharge summaries.

Authors:  W W Chapman; W Bridewell; P Hanbury; G F Cooper; B G Buchanan
Journal:  J Biomed Inform       Date:  2001-10       Impact factor: 6.317

4.  Syntactically-informed semantic category recognition in discharge summaries.

Authors:  Tawanda Sibanda; Tian He; Peter Szolovits; Ozlem Uzuner
Journal:  AMIA Annu Symp Proc       Date:  2006

5.  Design of a multi-classifier system for discriminating benign from malignant thyroid nodules using routinely H&E-stained cytological images.

Authors:  Antonis Daskalakis; Spiros Kostopoulos; Panagiota Spyridonos; Dimitris Glotsos; Panagiota Ravazoula; Maria Kardari; Ioannis Kalatzis; Dionisis Cavouras; George Nikiforidis
Journal:  Comput Biol Med       Date:  2007-11-09       Impact factor: 4.589

6.  Disease surveillance and nonprescription medication sales can predict increases in poison exposure.

Authors:  Edward Krenzelok; Erma MacPherson; Rita Mrvos
Journal:  J Med Toxicol       Date:  2008-03

7.  Three approaches to automatic assignment of ICD-9-CM codes to radiology reports.

Authors:  Ira Goldstein; Anna Arzrumtsyan; Ozlem Uzuner
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

8.  Identifying patient smoking status from medical discharge records.

Authors:  Ozlem Uzuner; Ira Goldstein; Yuan Luo; Isaac Kohane
Journal:  J Am Med Inform Assoc       Date:  2007-10-18       Impact factor: 4.497

  8 in total
  5 in total

1.  A translational engine at the national scale: informatics for integrating biology and the bedside.

Authors:  Isaac S Kohane; Susanne E Churchill; Shawn N Murphy
Journal:  J Am Med Inform Assoc       Date:  2011-11-10       Impact factor: 4.497

2.  Effective hypertensive treatment using data mining in Saudi Arabia.

Authors:  Abdulaziz S Almazyad; Mohammed Gulam Ahamad; Mohammad Khubeb Siddiqui; Abdullah S Almazyad
Journal:  J Clin Monit Comput       Date:  2010-10-27       Impact factor: 2.502

3.  Automatic lymphoma classification with sentence subgraph mining from pathology reports.

Authors:  Yuan Luo; Aliyah R Sohani; Ephraim P Hochberg; Peter Szolovits
Journal:  J Am Med Inform Assoc       Date:  2014-01-15       Impact factor: 4.497

4.  Functional evaluation of out-of-the-box text-mining tools for data-mining tasks.

Authors:  Kenneth Jung; Paea LePendu; Srinivasan Iyer; Anna Bauer-Mehren; Bethany Percha; Nigam H Shah
Journal:  J Am Med Inform Assoc       Date:  2014-10-21       Impact factor: 4.497

5.  The Comparative Experimental Study of Multilabel Classification for Diagnosis Assistant Based on Chinese Obstetric EMRs.

Authors:  Kunli Zhang; Hongchao Ma; Yueshu Zhao; Hongying Zan; Lei Zhuang
Journal:  J Healthc Eng       Date:  2018-02-05       Impact factor: 2.682

  5 in total

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