Literature DB >> 16779084

Extracting diagnoses from discharge summaries.

William Long1.   

Abstract

We have developed a program for extracting the diagnoses and procedures from the past medical history and discharge diagnoses in the discharge summary of a case and coding these using SNOMED-CT in the UMLS. The program uses a limited amount of natural language processing. Rather, it makes use of the relatively standard structure of the discharge summary, a small dictionary to divide the text into phrases, and the extensive collection of phrases for concepts in the UMLS to do the coding. With this approach the program finds 240 of 250 desired concepts with 19 false positives in 23 discharge summaries.

Mesh:

Year:  2005        PMID: 16779084      PMCID: PMC1560678     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  8 in total

1.  Use of general-purpose negation detection to augment concept indexing of medical documents: a quantitative study using the UMLS.

Authors:  P G Mutalik; A Deshpande; P M Nadkarni
Journal:  J Am Med Inform Assoc       Date:  2001 Nov-Dec       Impact factor: 4.497

2.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

3.  Automating SNOMED coding using medical language understanding: a feasibility study.

Authors:  Y A Lussier; L Shagina; C Friedman
Journal:  Proc AMIA Symp       Date:  2001

4.  Aggregating UMLS semantic types for reducing conceptual complexity.

Authors:  A T McCray; A Burgun; O Bodenreider
Journal:  Stud Health Technol Inform       Date:  2001

5.  Electronically screening discharge summaries for adverse medical events.

Authors:  Harvey J Murff; Alan J Forster; Josh F Peterson; Julie M Fiskio; Heather L Heiman; David W Bates
Journal:  J Am Med Inform Assoc       Date:  2003-03-28       Impact factor: 4.497

6.  A simple algorithm for identifying negated findings and diseases in discharge summaries.

Authors:  W W Chapman; W Bridewell; P Hanbury; G F Cooper; B G Buchanan
Journal:  J Biomed Inform       Date:  2001-10       Impact factor: 6.317

7.  Automated encoding of clinical documents based on natural language processing.

Authors:  Carol Friedman; Lyudmila Shagina; Yves Lussier; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2004-06-07       Impact factor: 4.497

8.  The Unified Medical Language System.

Authors:  D A Lindberg; B L Humphreys; A T McCray
Journal:  Methods Inf Med       Date:  1993-08       Impact factor: 2.176

  8 in total
  17 in total

1.  Estimating Patient's Health State Using Latent Structure Inferred from Clinical Time Series and Text.

Authors:  Aaron Zalewski; William Long; Alistair E W Johnson; Roger G Mark; Li-Wei H Lehman
Journal:  IEEE EMBS Int Conf Biomed Health Inform       Date:  2017-04-13

2.  Phenotyping Hypotensive Patients in Critical Care Using Hospital Discharge Summaries.

Authors:  Yang Dai; Sharukh Lokhandwala; William Long; Roger Mark; Li-Wei H Lehman
Journal:  IEEE EMBS Int Conf Biomed Health Inform       Date:  2017-04-13

3.  Syntactically-informed semantic category recognition in discharge summaries.

Authors:  Tawanda Sibanda; Tian He; Peter Szolovits; Ozlem Uzuner
Journal:  AMIA Annu Symp Proc       Date:  2006

4.  Identifying smokers with a medical extraction system.

Authors:  Cheryl Clark; Kathleen Good; Lesley Jezierny; Melissa Macpherson; Brian Wilson; Urszula Chajewska
Journal:  J Am Med Inform Assoc       Date:  2007-10-18       Impact factor: 4.497

5.  Three approaches to automatic assignment of ICD-9-CM codes to radiology reports.

Authors:  Ira Goldstein; Anna Arzrumtsyan; Ozlem Uzuner
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

6.  Lessons extracting diseases from discharge summaries.

Authors:  William Long
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

Review 7.  Literature review of SNOMED CT use.

Authors:  Dennis Lee; Nicolette de Keizer; Francis Lau; Ronald Cornet
Journal:  J Am Med Inform Assoc       Date:  2013-07-04       Impact factor: 4.497

8.  Latent topic discovery of clinical concepts from hospital discharge summaries of a heterogeneous patient cohort.

Authors:  Li-Wei Lehman; William Long; Mohammed Saeed; Roger Mark
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2014

9.  Automated Extraction of Substance Use Information from Clinical Texts.

Authors:  Yan Wang; Elizabeth S Chen; Serguei Pakhomov; Elliot Arsoniadis; Elizabeth W Carter; Elizabeth Lindemann; Indra Neil Sarkar; Genevieve B Melton
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

10.  Automatic lymphoma classification with sentence subgraph mining from pathology reports.

Authors:  Yuan Luo; Aliyah R Sohani; Ephraim P Hochberg; Peter Szolovits
Journal:  J Am Med Inform Assoc       Date:  2014-01-15       Impact factor: 4.497

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