Literature DB >> 17223533

Structure of the Bateman2 domain of yeast Snf4: dimeric association and relevance for AMP binding.

Michael J Rudolph1, Gabriele A Amodeo, Surtaj H Iram, Seung-Pyo Hong, Giorgia Pirino, Marian Carlson, Liang Tong.   

Abstract

AMP-activated protein kinase (AMPK) is a central regulator of energy homeostasis in mammals. AMP is believed to control the activity of AMPK by binding to the gamma subunit of this heterotrimeric enzyme. This subunit contains two Bateman domains, each of which is composed of a tandem pair of cystathionine beta-synthase (CBS) motifs. No structural information is currently available on this subunit, and the molecular basis for its interactions with AMP is not well understood. We report here the crystal structure at 1.9 Angstrom resolution of the Bateman2 domain of Snf4, the gamma subunit of the yeast ortholog of AMPK. The structure revealed a dimer of the Bateman2 domain, and this dimerization is supported by our light-scattering, mutagenesis, and biochemical studies. There is a prominent pocket at the center of this dimer, and most of the disease-causing mutations are located in or near this pocket.

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Year:  2007        PMID: 17223533     DOI: 10.1016/j.str.2006.11.014

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  10 in total

1.  Unique gating properties of C. elegans ClC anion channel splice variants are determined by altered CBS domain conformation and the R-helix linker.

Authors:  Sonya Dave; Jonathan H Sheehan; Jens Meiler; Kevin Strange
Journal:  Channels (Austin)       Date:  2010-07-21       Impact factor: 2.581

2.  Purification, crystallization and preliminary X-ray diffraction analysis of the CBS-domain pair from the Methanococcus jannaschii protein MJ0100.

Authors:  María Lucas; Danel Kortazar; Egoitz Astigarraga; José A Fernández; Jose M Mato; María Luz Martínez-Chantar; Luis Alfonso Martínez-Cruz
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-09-30

3.  Purification, crystallization and preliminary crystallographic analysis of protein MJ1225 from Methanocaldococcus jannaschii, a putative archaeal homologue of gamma-AMPK.

Authors:  Inmaculada Gómez García; Danel Kortázar; Iker Oyenarte; José María Mato; María Luz Martínez-Chantar; Luis Alfonso Martínez-Cruz
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-07-30

4.  Purification, crystallization and preliminary X-ray diffraction analysis of a cystathionine beta-synthase domain-containing protein, CDCP2, from Arabidopsis thaliana.

Authors:  Byung Cheon Jeong; Kyoung Shin Yoo; Kwang Wook Jung; Jeong Sheop Shin; Hyun Kyu Song
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-08-20

5.  Purification, crystallization and preliminary crystallographic analysis of the CBS-domain protein MJ1004 from Methanocaldococcus jannaschii.

Authors:  Iker Oyenarte; María Lucas; Inmaculada Gómez García; Luis Alfonso Martínez-Cruz
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-02-23

6.  Biochemical and functional studies on the regulation of the Saccharomyces cerevisiae AMPK homolog SNF1.

Authors:  Gabriele A Amodeo; Milica Momcilovic; Marian Carlson; Liang Tong
Journal:  Biochem Biophys Res Commun       Date:  2010-05-31       Impact factor: 3.575

7.  Crystal structure of a hypothetical protein, TTHA0829 from Thermus thermophilus HB8, composed of cystathionine-β-synthase (CBS) and aspartate-kinase chorismate-mutase tyrA (ACT) domains.

Authors:  Makoto Nakabayashi; Naoki Shibata; Emi Ishido-Nakai; Mayumi Kanagawa; Yota Iio; Hirofumi Komori; Yasufumi Ueda; Noriko Nakagawa; Seiki Kuramitsu; Yoshiki Higuchi
Journal:  Extremophiles       Date:  2016-03-03       Impact factor: 2.395

8.  Biochemical and structural characterization of a novel family of cystathionine beta-synthase domain proteins fused to a Zn ribbon-like domain.

Authors:  Michael Proudfoot; Stephen A Sanders; Alex Singer; Rongguang Zhang; Greg Brown; Andrew Binkowski; Linda Xu; Jonathan A Lukin; Alexey G Murzin; Andrzej Joachimiak; Cheryl H Arrowsmith; Aled M Edwards; Alexei V Savchenko; Alexander F Yakunin
Journal:  J Mol Biol       Date:  2007-11-01       Impact factor: 5.469

9.  Roles of the glycogen-binding domain and Snf4 in glucose inhibition of SNF1 protein kinase.

Authors:  Milica Momcilovic; Surtaj H Iram; Yang Liu; Marian Carlson
Journal:  J Biol Chem       Date:  2008-05-12       Impact factor: 5.157

Review 10.  Mechanisms of regulation of SNF1/AMPK/SnRK1 protein kinases.

Authors:  Pierre Crozet; Leonor Margalha; Ana Confraria; Américo Rodrigues; Cláudia Martinho; Mattia Adamo; Carlos A Elias; Elena Baena-González
Journal:  Front Plant Sci       Date:  2014-05-20       Impact factor: 5.753

  10 in total

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