Literature DB >> 26936147

Crystal structure of a hypothetical protein, TTHA0829 from Thermus thermophilus HB8, composed of cystathionine-β-synthase (CBS) and aspartate-kinase chorismate-mutase tyrA (ACT) domains.

Makoto Nakabayashi1,2, Naoki Shibata3,4, Emi Ishido-Nakai5, Mayumi Kanagawa5, Yota Iio6, Hirofumi Komori7, Yasufumi Ueda7, Noriko Nakagawa6, Seiki Kuramitsu6, Yoshiki Higuchi7,5.   

Abstract

TTHA0829 from Thermus thermophilus HB8 has a molecular mass of 22,754 Da and is composed of 210 amino acid residues. The expression of TTHA0829 is remarkably elevated in the latter half of logarithmic growth phase. TTHA0829 can form either a tetrameric or dimeric structure, and main-chain folding provides an N-terminal cystathionine-β-synthase (CBS) domain and a C-terminal aspartate-kinase chorismate-mutase tyrA (ACT) domain. Both CBS and ACT are regulatory domains to which a small ligand molecule can bind. The CBS domain is found in proteins from organisms belonging to all kingdoms and is observed frequently as two or four tandem copies. This domain is considered as a small intracellular module with a regulatory function and is typically found adjacent to the active (or functional) site of several enzymes and integral membrane proteins. The ACT domain comprises four β-strands and two α-helices in a βαββαβ motif typical of intracellular small molecule binding domains that help control metabolism, solute transport and signal transduction. We discuss the possible role of TTHA0829 based on its structure and expression pattern. The results imply that TTHA0829 acts as a cell-stress sensor or a metabolite acceptor.

Entities:  

Keywords:  ACT domain; CBS domain; Crystal structure; Gene-annotation; Hypothetical protein; Thermus thermophilus HB8

Mesh:

Substances:

Year:  2016        PMID: 26936147     DOI: 10.1007/s00792-016-0817-y

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  55 in total

1.  Crystal structure of a tandem cystathionine-beta-synthase (CBS) domain protein (TM0935) from Thermotoga maritima at 1.87 A resolution.

Authors:  Mitchell D Miller; Robert Schwarzenbacher; Frank von Delft; Polat Abdubek; Eileen Ambing; Tanya Biorac; Linda S Brinen; Jaume M Canaves; Jamison Cambell; Hsiu-Ju Chiu; Xiaoping Dai; Ashley M Deacon; Mike DiDonato; Marc-André Elsliger; Said Eshagi; Ross Floyd; Adam Godzik; Carina Grittini; Slawomir K Grzechnik; Eric Hampton; Lukasz Jaroszewski; Cathy Karlak; Heath E Klock; Eric Koesema; John S Kovarik; Andreas Kreusch; Peter Kuhn; Scott A Lesley; Inna Levin; Daniel McMullan; Timothy M McPhillips; Andrew Morse; Kin Moy; Jie Ouyang; Rebecca Page; Kevin Quijano; Alyssa Robb; Glen Spraggon; Raymond C Stevens; Henry van den Bedem; Jeff Velasquez; Juli Vincent; Xianhong Wang; Bill West; Guenter Wolf; Qingping Xu; Keith O Hodgson; John Wooley; Ian A Wilson
Journal:  Proteins       Date:  2004-10-01

2.  Structure of the regulatory subunit of acetohydroxyacid synthase isozyme III from Escherichia coli.

Authors:  Alexander Kaplun; Maria Vyazmensky; Yuri Zherdev; Inna Belenky; Alex Slutzker; Sharon Mendel; Ze'ev Barak; David M Chipman; Boaz Shaanan
Journal:  J Mol Biol       Date:  2006-01-18       Impact factor: 5.469

3.  Crystallization of a protein using dehydration without a precipitant.

Authors:  Miriam L Sharpe; Edward N Baker; J Shaun Lott
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-06-01

4.  [27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

Authors:  Eric de La Fortelle; Gérard Bricogne
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

5.  A novel organization of ACT domains in allosteric enzymes revealed by the crystal structure of Arabidopsis aspartate kinase.

Authors:  Corine Mas-Droux; Gilles Curien; Mylène Robert-Genthon; Mathieu Laurencin; Jean-Luc Ferrer; Renaud Dumas
Journal:  Plant Cell       Date:  2006-05-26       Impact factor: 11.277

6.  Hypoxic response of Mycobacterium tuberculosis studied by metabolic labeling and proteome analysis of cellular and extracellular proteins.

Authors:  Ida Rosenkrands; Richard A Slayden; Janne Crawford; Claus Aagaard; Clifton E Barry; Peter Andersen
Journal:  J Bacteriol       Date:  2002-07       Impact factor: 3.490

7.  Crystal structure of ATP phosphoribosyltransferase from Mycobacterium tuberculosis.

Authors:  Yoonsang Cho; Vivek Sharma; James C Sacchettini
Journal:  J Biol Chem       Date:  2003-01-02       Impact factor: 5.157

8.  Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8.

Authors:  Akeo Shinkai; Satoshi Kira; Noriko Nakagawa; Aiko Kashihara; Seiki Kuramitsu; Shigeyuki Yokoyama
Journal:  J Bacteriol       Date:  2007-03-16       Impact factor: 3.490

9.  Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure.

Authors:  W A Hendrickson; J R Horton; D M LeMaster
Journal:  EMBO J       Date:  1990-05       Impact factor: 11.598

10.  Structure of Pseudomonas aeruginosa inosine 5'-monophosphate dehydrogenase.

Authors:  Vincenzo A Rao; Sharon M Shepherd; Richard Owen; William N Hunter
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-02-22
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  1 in total

1.  Tetrameric Structures of Inorganic CBS-Pyrophosphatases from Various Bacterial Species Revealed by Small-Angle X-ray Scattering in Solution.

Authors:  Liubov A Dadinova; Ekaterina Yu Soshinskaia; Cy M Jeffries; Dmitri I Svergun; Eleonora V Shtykova
Journal:  Biomolecules       Date:  2020-04-07
  1 in total

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