Literature DB >> 17202214

Theory of lethal mutagenesis for viruses.

J J Bull1, R Sanjuán, C O Wilke.   

Abstract

Mutation is the basis of adaptation. Yet, most mutations are detrimental, and elevating mutation rates will impair a population's fitness in the short term. The latter realization has led to the concept of lethal mutagenesis for curing viral infections, and work with drugs such as ribavirin has supported this perspective. As yet, there is no formal theory of lethal mutagenesis, although reference is commonly made to Eigen's error catastrophe theory. Here, we propose a theory of lethal mutagenesis. With an obvious parallel to the epidemiological threshold for eradication of a disease, a sufficient condition for lethal mutagenesis is that each viral genotype produces, on average, less than one progeny virus that goes on to infect a new cell. The extinction threshold involves an evolutionary component based on the mutation rate, but it also includes an ecological component, so the threshold cannot be calculated from the mutation rate alone. The genetic evolution of a large population undergoing mutagenesis is independent of whether the population is declining or stable, so there is no runaway accumulation of mutations or genetic signature for lethal mutagenesis that distinguishes it from a level of mutagenesis under which the population is maintained. To detect lethal mutagenesis, accurate measurements of the genome-wide mutation rate and the number of progeny per infected cell that go on to infect new cells are needed. We discuss three methods for estimating the former. Estimating the latter is more challenging, but broad limits to this estimate may be feasible.

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Year:  2007        PMID: 17202214      PMCID: PMC1865999          DOI: 10.1128/JVI.01624-06

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  55 in total

1.  Moving the glycoprotein gene of vesicular stomatitis virus to promoter-proximal positions accelerates and enhances the protective immune response.

Authors:  E B Flanagan; L A Ball; G W Wertz
Journal:  J Virol       Date:  2000-09       Impact factor: 5.103

2.  The solitary wave of asexual evolution.

Authors:  Igor M Rouzine; John Wakeley; John M Coffin
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-13       Impact factor: 11.205

3.  Rates of spontaneous mutation among RNA viruses.

Authors:  J W Drake
Journal:  Proc Natl Acad Sci U S A       Date:  1993-05-01       Impact factor: 11.205

4.  The accumulation of deleterious genes in a population--Muller's Ratchet.

Authors:  J Haigh
Journal:  Theor Popul Biol       Date:  1978-10       Impact factor: 1.570

5.  Fitness of RNA virus decreased by Muller's ratchet.

Authors:  L Chao
Journal:  Nature       Date:  1990-11-29       Impact factor: 49.962

6.  Heterogeneity of the mutation rates of influenza A viruses: isolation of mutator mutants.

Authors:  P Suárez; J Valcárcel; J Ortín
Journal:  J Virol       Date:  1992-04       Impact factor: 5.103

7.  Subclonal components of consensus fitness in an RNA virus clone.

Authors:  E A Duarte; I S Novella; S Ledesma; D K Clarke; A Moya; S F Elena; E Domingo; J J Holland
Journal:  J Virol       Date:  1994-07       Impact factor: 5.103

8.  The distribution of mutation effects on viability in Drosophila melanogaster.

Authors:  P D Keightley
Journal:  Genetics       Date:  1994-12       Impact factor: 4.562

9.  Negative effects of chemical mutagenesis on the adaptive behavior of vesicular stomatitis virus.

Authors:  C H Lee; D L Gilbertson; I S Novella; R Huerta; E Domingo; J J Holland
Journal:  J Virol       Date:  1997-05       Impact factor: 5.103

Review 10.  Mechanisms of action of ribavirin against distinct viruses.

Authors:  Jason D Graci; Craig E Cameron
Journal:  Rev Med Virol       Date:  2006 Jan-Feb       Impact factor: 6.989

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  109 in total

Review 1.  Viral quasispecies evolution.

Authors:  Esteban Domingo; Julie Sheldon; Celia Perales
Journal:  Microbiol Mol Biol Rev       Date:  2012-06       Impact factor: 11.056

Review 2.  Viral mutation rates.

Authors:  Rafael Sanjuán; Miguel R Nebot; Nicola Chirico; Louis M Mansky; Robert Belshaw
Journal:  J Virol       Date:  2010-07-21       Impact factor: 5.103

3.  Pathways to extinction: beyond the error threshold.

Authors:  Susanna C Manrubia; Esteban Domingo; Ester Lázaro
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-06-27       Impact factor: 6.237

4.  An Extended Primer Grip of Picornavirus Polymerase Facilitates Sexual RNA Replication Mechanisms.

Authors:  Brian J Kempf; Colleen L Watkins; Olve B Peersen; David J Barton
Journal:  J Virol       Date:  2020-07-30       Impact factor: 5.103

5.  Multiple genetic pathways to similar fitness limits during viral adaptation to a new host.

Authors:  Andre H Nguyen; Ian J Molineux; Rachael Springman; James J Bull
Journal:  Evolution       Date:  2011-09-20       Impact factor: 3.694

6.  Activity of a novel combined antiretroviral therapy of gemcitabine and decitabine in a mouse model for HIV-1.

Authors:  Christine L Clouser; Colleen M Holtz; Mary Mullett; Daune L Crankshaw; Jacquie E Briggs; M Gerard O'Sullivan; Steven E Patterson; Louis M Mansky
Journal:  Antimicrob Agents Chemother       Date:  2012-01-23       Impact factor: 5.191

7.  Structure-function relationships of the viral RNA-dependent RNA polymerase: fidelity, replication speed, and initiation mechanism determined by a residue in the ribose-binding pocket.

Authors:  Victoria S Korneeva; Craig E Cameron
Journal:  J Biol Chem       Date:  2007-03-29       Impact factor: 5.157

8.  Protein stability imposes limits on organism complexity and speed of molecular evolution.

Authors:  Konstantin B Zeldovich; Peiqiu Chen; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-03       Impact factor: 11.205

9.  The optimal burst of mutation to create a phenotype.

Authors:  J J Bull
Journal:  J Theor Biol       Date:  2008-06-18       Impact factor: 2.691

10.  West Nile Virus fidelity modulates the capacity for host cycling and adaptation.

Authors:  Haley S Caldwell; Kiet Ngo; Janice D Pata; Laura D Kramer; Alexander T Ciota
Journal:  J Gen Virol       Date:  2020-02-18       Impact factor: 3.891

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