Literature DB >> 18619470

The optimal burst of mutation to create a phenotype.

J J Bull1.   

Abstract

Mutagenesis is commonly applied to genes and genomes to create novel variants with desired properties. This paper calculates the level of mutagenesis that maximizes the appearance of favorable mutants, assuming that the mutagenesis is applied in a single episode. The downside of mutagenesis is that a substantial fraction of mutations will destroy gene/genome function. The upside of mutagenesis is the production of beneficial mutations, but the desired phenotype may require that 1, 2 or more beneficial mutations be present simultaneously (the phenotype dimensionality). The optimum level of mutagenesis is sensitive to both properties. In the simplest model, the mutation optimum occurs when number of lethal equivalents per genome equals the phenotype dimensionality, a result first derived by Mundry and Gierer [1958. Production of mutations in tobacco mosaic virus by chemical treatment of its nucleic acid in vitro. Z. Vererbungsl. 89 (4), 614-630]. This level of mutation is shown to be an upper bound for the optimum in various extensions of the model, and the recovery of mutants is also reasonably tolerant to deviations from the optimum.

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Year:  2008        PMID: 18619470      PMCID: PMC2637111          DOI: 10.1016/j.jtbi.2008.06.006

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  44 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

2.  Interaction between directional epistasis and average mutational effects.

Authors:  C O Wilke; C Adami
Journal:  Proc Biol Sci       Date:  2001-07-22       Impact factor: 5.349

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Journal:  Proc Natl Acad Sci U S A       Date:  1964-11       Impact factor: 11.205

4.  Protein tolerance to random amino acid change.

Authors:  Haiwei H Guo; Juno Choe; Lawrence A Loeb
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-14       Impact factor: 11.205

5.  Thermodynamic prediction of protein neutrality.

Authors:  Jesse D Bloom; Jonathan J Silberg; Claus O Wilke; D Allan Drummond; Christoph Adami; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-11       Impact factor: 11.205

6.  The origin of mutants.

Authors:  J Cairns; J Overbaugh; S Miller
Journal:  Nature       Date:  1988-09-08       Impact factor: 49.962

7.  Evolution of high mutation rates in experimental populations of E. coli.

Authors:  P D Sniegowski; P J Gerrish; R E Lenski
Journal:  Nature       Date:  1997-06-12       Impact factor: 49.962

8.  Amplification-mutagenesis: evidence that "directed" adaptive mutation and general hypermutability result from growth with a selected gene amplification.

Authors:  Heather Hendrickson; E Susan Slechta; Ulfar Bergthorsson; Dan I Andersson; John R Roth
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-05       Impact factor: 11.205

9.  Changes in the ultraviolet sensitivity of Escherichia coli during growth in batch cultures.

Authors:  R A Morton; R H Haynes
Journal:  J Bacteriol       Date:  1969-03       Impact factor: 3.490

10.  Compensatory mutations cause excess of antagonistic epistasis in RNA secondary structure folding.

Authors:  Claus O Wilke; Richard E Lenski; Christoph Adami
Journal:  BMC Evol Biol       Date:  2003-02-05       Impact factor: 3.260

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  4 in total

1.  Lethal mutagenesis failure may augment viral adaptation.

Authors:  Matthew L Paff; Steven P Stolte; James J Bull
Journal:  Mol Biol Evol       Date:  2013-10-03       Impact factor: 16.240

2.  Directed adenovirus evolution using engineered mutator viral polymerases.

Authors:  Taco G Uil; Jort Vellinga; Jeroen de Vrij; Sanne K van den Hengel; Martijn J W E Rabelink; Steve J Cramer; Julia J M Eekels; Yavuz Ariyurek; Michiel van Galen; Rob C Hoeben
Journal:  Nucleic Acids Res       Date:  2010-12-07       Impact factor: 16.971

3.  Evolutionary invasion and escape in the presence of deleterious mutations.

Authors:  Claude Loverdo; James O Lloyd-Smith
Journal:  PLoS One       Date:  2013-07-17       Impact factor: 3.240

4.  Experimental evolution of UV resistance in a phage.

Authors:  Eric F Tom; Ian J Molineux; Matthew L Paff; James J Bull
Journal:  PeerJ       Date:  2018-07-09       Impact factor: 2.984

  4 in total

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