Literature DB >> 17197421

Internal conversion to the electronic ground state occurs via two distinct pathways for pyrimidine bases in aqueous solution.

Patrick M Hare1, Carlos E Crespo-Hernández, Bern Kohler.   

Abstract

The femtosecond transient absorption technique was used to study the relaxation of excited electronic states created by absorption of 267-nm light in all of the naturally occurring pyrimidine DNA and RNA bases in aqueous solution. The results reveal a surprising bifurcation of the initial excited-state population in <1 ps to two nonradiative decay channels within the manifold of singlet states. The first is the subpicosecond internal conversion channel first characterized in 2000. The second channel involves passage through a dark intermediate state assigned to a lowest-energy (1)npi* state. Approximately 10-50% of all photoexcited pyrimidine bases decay via the (1)npi* state, which has a lifetime of 10-150 ps. Three- to 6-fold-longer lifetimes are seen for pyrimidine nucleotides and nucleosides than for the corresponding free bases, revealing an unprecedented effect of ribosyl substitution on electronic energy relaxation. A small fraction of the (1)npi* population is proposed to undergo intersystem crossing to the lowest triplet state in competition with vibrational cooling, explaining the higher triplet yields observed for pyrimidine versus purine bases at room temperature. Some simple correlations exist between yields of the (1)npi* state and yields of some pyrimidine photoproducts, but more work is needed before the photochemical consequences of this state can be definitively determined. These findings lead to a dramatically different picture of electronic energy relaxation in single pyrimidine bases with important ramifications for understanding DNA photostability.

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Year:  2006        PMID: 17197421      PMCID: PMC1766402          DOI: 10.1073/pnas.0608055104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

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3.  Excited-state potential energy surface for the photophysics of adenine.

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Journal:  J Am Chem Soc       Date:  2006-01-11       Impact factor: 15.419

4.  Solvent-dependent photophysics of 1-cyclohexyluracil: ultrafast branching in the initial bright state leads nonradiatively to the electronic ground state and a long-lived 1npi* state.

Authors:  Patrick M Hare; Carlos E Crespo-Hernández; Bern Kohler
Journal:  J Phys Chem B       Date:  2006-09-21       Impact factor: 2.991

5.  Adenine and 2-aminopurine: paradigms of modern theoretical photochemistry.

Authors:  Luis Serrano-Andrés; Manuela Merchán; Antonio C Borin
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-26       Impact factor: 11.205

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Journal:  J Am Chem Soc       Date:  2003-07-09       Impact factor: 15.419

9.  Flexibility of single-stranded DNA: use of gapped duplex helices to determine the persistence lengths of poly(dT) and poly(dA).

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Authors:  Nina Ismail; Lluís Blancafort; Massimo Olivucci; Bern Kohler; Michael A Robb
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  22 in total

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Authors:  Patrick M Hare; Chris T Middleton; Kristin I Mertel; John M Herbert; Bern Kohler
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6.  Monitoring Non-Adiabatic Dynamics of the RNA Base Uracil by UV-Pump-IR-Probe Spectroscopy.

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7.  On the Origin of the Canonical Nucleobases: An Assessment of Selection Pressures across Chemical and Early Biological Evolution.

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8.  UV excitation of single DNA and RNA strands produces high yields of exciplex states between two stacked bases.

Authors:  Tomohisa Takaya; Charlene Su; Kimberly de La Harpe; Carlos E Crespo-Hernández; Bern Kohler
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-22       Impact factor: 11.205

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