Literature DB >> 16731617

Adenine and 2-aminopurine: paradigms of modern theoretical photochemistry.

Luis Serrano-Andrés1, Manuela Merchán, Antonio C Borin.   

Abstract

Distinct photophysical behavior of nucleobase adenine and its constitutional isomer, 2-aminopurine, has been studied by using quantum chemical methods, in particular an accurate ab initio multiconfigurational second-order perturbation theory. After light irradiation, the efficient, ultrafast energy dissipation observed for nonfluorescent 9H-adenine is explained here by the nonradiative internal conversion process taking place along a barrierless reaction path from the initially populated 1(pipi* La) excited state toward a low-lying conical intersection (CI) connected with the ground state. In contrast, the strong fluorescence recorded for 2-aminopurine at 4.0 eV with large decay lifetime is interpreted by the presence of a minimum in the 1(pipi* La) hypersurface lying below the lowest CI and the subsequent potential energy barrier required to reach the funnel to the ground state. Secondary deactivation channels were found in the two systems related to additional CIs involving the 1(pipi* Lb) and 1(npi*) states. Although in 9H-adenine a population switch between both states is proposed, in 7H-adenine this may be perturbed by a relatively larger barrier to access the 1(npi*) state, and, therefore, the 1(pipi* Lb) state becomes responsible for the weak fluorescence measured in aqueous adenine at approximately 4.5 eV. In contrast to previous models that explained fluorescence quenching in adenine, unlike in 2-aminopurine, on the basis of the vibronic coupling of the nearby 1(pipi*) and 1(npi*) states, the present results indicate that the 1(npi*) state does not contribute to the leading photophysical event and establish the prevalence of a model based on the CI concept in modern photochemistry.

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Year:  2006        PMID: 16731617      PMCID: PMC1482641          DOI: 10.1073/pnas.0602991103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  Femtosecond charge transfer dynamics of a modified DNA base: 2-aminopurine in complexes with nucleotides.

Authors:  Torsten Fiebig; Chaozhi Wan; Ahmed H Zewail
Journal:  Chemphyschem       Date:  2002-09-16       Impact factor: 3.102

2.  Intrinsic lifetimes of the excited state of DNA and RNA bases.

Authors:  Hyuk Kang; Kang Taek Lee; Boyong Jung; Yeon Jae Ko; Seong Keun Kim
Journal:  J Am Chem Soc       Date:  2002-11-06       Impact factor: 15.419

3.  Computation of conical intersections by using perturbation techniques.

Authors:  Luis Serrano-Andrés; Manuela Merchán; Roland Lindh
Journal:  J Chem Phys       Date:  2005-03-08       Impact factor: 3.488

4.  Ab initio studies on the radiationless decay mechanisms of the lowest excited singlet states of 9H-adenine.

Authors:  Serhiy Perun; Andrzej L Sobolewski; Wolfgang Domcke
Journal:  J Am Chem Soc       Date:  2005-05-04       Impact factor: 15.419

5.  Tautomers and electronic states of jet-cooled 2-aminopurine investigated by double resonance spectroscopy and theory.

Authors:  Kai A Seefeld; Christian Plützer; Dennis Löwenich; Thomas Häber; Rolf Linder; Karl Kleinermanns; Jörg Tatchen; Christel M Marian
Journal:  Phys Chem Chem Phys       Date:  2005-07-15       Impact factor: 3.676

6.  Magnetic circular dichroism of adenine, hypoxanthine, and guanosine 5'-diphosphate to 180 nm.

Authors:  J C Sutherland; K Griffin
Journal:  Biopolymers       Date:  1984-12       Impact factor: 2.505

7.  Probing structure and dynamics of DNA with 2-aminopurine: effects of local environment on fluorescence.

Authors:  E L Rachofsky; R Osman; J B Ross
Journal:  Biochemistry       Date:  2001-01-30       Impact factor: 3.162

8.  Ultrafast internal conversion of excited cytosine via the lowest pipi electronic singlet state.

Authors:  Manuela Merchán; Luis Serrano-Andrés
Journal:  J Am Chem Soc       Date:  2003-07-09       Impact factor: 15.419

9.  Influence of 5'-nearest neighbors on the insertion kinetics of the fluorescent nucleotide analog 2-aminopurine by Klenow fragment.

Authors:  L B Bloom; M R Otto; J M Beechem; M F Goodman
Journal:  Biochemistry       Date:  1993-10-19       Impact factor: 3.162

10.  Ultrafast decay of electronically excited singlet cytosine via a pi,pi* to n(O),pi* state switch.

Authors:  Nina Ismail; Lluís Blancafort; Massimo Olivucci; Bern Kohler; Michael A Robb
Journal:  J Am Chem Soc       Date:  2002-06-19       Impact factor: 15.419

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  24 in total

1.  Internal conversion to the electronic ground state occurs via two distinct pathways for pyrimidine bases in aqueous solution.

Authors:  Patrick M Hare; Carlos E Crespo-Hernández; Bern Kohler
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-29       Impact factor: 11.205

2.  Influence of base stacking on excited-state behavior of polyadenine in water, based on time-dependent density functional calculations.

Authors:  F Santoro; V Barone; R Improta
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-01       Impact factor: 11.205

3.  Long-distance placement of substrate RNA by H/ACA proteins.

Authors:  Bo Liang; Elliot J Kahen; Kate Calvin; Jing Zhou; Mario Blanco; Hong Li
Journal:  RNA       Date:  2008-08-28       Impact factor: 4.942

4.  Ultrafast excited-state dynamics of RNA and DNA C tracts.

Authors:  Boiko Cohen; Matthew H Larson; Bern Kohler
Journal:  Chem Phys       Date:  2008-06       Impact factor: 2.348

Review 5.  Fluorescent analogs of biomolecular building blocks: design, properties, and applications.

Authors:  Renatus W Sinkeldam; Nicholas J Greco; Yitzhak Tor
Journal:  Chem Rev       Date:  2010-05-12       Impact factor: 60.622

6.  Switching on the fluorescence of 2-aminopurine by site-selective microhydration.

Authors:  Simon Lobsiger; Susan Blaser; Rajeev K Sinha; Hans-Martin Frey; Samuel Leutwyler
Journal:  Nat Chem       Date:  2014-10-19       Impact factor: 24.427

7.  Photodimerizations of hydroxy- and benzoylated 4-azachalcones and quantum chemical investigation of the reactions.

Authors:  Ahmet Yaşar; Nuran Yayli; Asu Usta; Nurettin Yayli
Journal:  J Mol Model       Date:  2010-02-06       Impact factor: 1.810

8.  Exciplexes and conical intersections lead to fluorescence quenching in π-stacked dimers of 2-aminopurine with natural purine nucleobases.

Authors:  JingXin Liang; Quynh L Nguyen; Spiridoula Matsika
Journal:  Photochem Photobiol Sci       Date:  2013-08       Impact factor: 3.982

9.  Time-resolved infrared spectroscopy of the lowest triplet state of thymine and thymidine.

Authors:  Patrick M Hare; Chris T Middleton; Kristin I Mertel; John M Herbert; Bern Kohler
Journal:  Chem Phys       Date:  2008-05-23       Impact factor: 2.348

10.  Characterization of two adenosine analogs as fluorescence probes in RNA.

Authors:  Ying Zhao; Joseph L Knee; Anne M Baranger
Journal:  Bioorg Chem       Date:  2008-08-15       Impact factor: 5.275

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