Literature DB >> 17194796

Transposon Tn7 is widespread in diverse bacteria and forms genomic islands.

Adam R Parks1, Joseph E Peters.   

Abstract

We find that relatives of the bacterial transposon Tn7 are widespread in disparate environments and phylogenetically diverse species. These elements form functionally diverse genomic islands at the specific site of Tn7 insertion adjacent to glmS. This work presents the first example of genomic island formation by a DDE type transposon.

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Year:  2006        PMID： 17194796      PMCID： PMC1855776          DOI： 10.1128/JB.01536-06

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  26 in total

1.  Tn7 recognizes transposition target structures associated with DNA replication using the DNA-binding protein TnsE.

Authors:  J E Peters; N L Craig
Journal:  Genes Dev       Date:  2001-03-15       Impact factor: 11.361

2.  Alternative interactions between the Tn7 transposase and the Tn7 target DNA binding protein regulate target immunity and transposition.

Authors:  Zachary Skelding; Jennie Queen-Baker; Nancy L Craig
Journal:  EMBO J       Date:  2003-11-03       Impact factor: 11.598

Review 3.  Genomic islands in pathogenic and environmental microorganisms.

Authors:  Ulrich Dobrindt; Bianca Hochhut; Ute Hentschel; Jörg Hacker
Journal:  Nat Rev Microbiol       Date:  2004-05       Impact factor: 60.633

4.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

5.  DNA sequence analysis of five genes; tnsA, B, C, D and E, required for Tn7 transposition.

Authors:  C Flores; M I Qadri; C Lichtenstein
Journal:  Nucleic Acids Res       Date:  1990-02-25       Impact factor: 16.971

6.  Conjugating plasmids are preferred targets for Tn7.

Authors:  C A Wolkow; R T DeBoy; N L Craig
Journal:  Genes Dev       Date:  1996-09-01       Impact factor: 11.361

7.  Identification of a transposon Tn7-dependent DNA-binding activity that recognizes the ends of Tn7.

Authors:  R L McKown; C S Waddell; L K Arciszewska; N L Craig
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205

8.  Environmental genome shotgun sequencing of the Sargasso Sea.

Authors:  J Craig Venter; Karin Remington; John F Heidelberg; Aaron L Halpern; Doug Rusch; Jonathan A Eisen; Dongying Wu; Ian Paulsen; Karen E Nelson; William Nelson; Derrick E Fouts; Samuel Levy; Anthony H Knap; Michael W Lomas; Ken Nealson; Owen White; Jeremy Peterson; Jeff Hoffman; Rachel Parsons; Holly Baden-Tillson; Cynthia Pfannkoch; Yu-Hui Rogers; Hamilton O Smith
Journal:  Science       Date:  2004-03-04       Impact factor: 47.728

9.  The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1.

Authors:  David A Rasko; Jacques Ravel; Ole Andreas Økstad; Erlendur Helgason; Regina Z Cer; Lingxia Jiang; Kelly A Shores; Derrick E Fouts; Nicolas J Tourasse; Samuel V Angiuoli; James Kolonay; William C Nelson; Anne-Brit Kolstø; Claire M Fraser; Timothy D Read
Journal:  Nucleic Acids Res       Date:  2004-02-11       Impact factor: 16.971

10.  Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.

Authors:  John F Heidelberg; Ian T Paulsen; Karen E Nelson; Eric J Gaidos; William C Nelson; Timothy D Read; Jonathan A Eisen; Rekha Seshadri; Naomi Ward; Barbara Methe; Rebecca A Clayton; Terry Meyer; Alexandre Tsapin; James Scott; Maureen Beanan; Lauren Brinkac; Sean Daugherty; Robert T DeBoy; Robert J Dodson; A Scott Durkin; Daniel H Haft; James F Kolonay; Ramana Madupu; Jeremy D Peterson; Lowell A Umayam; Owen White; Alex M Wolf; Jessica Vamathevan; Janice Weidman; Marjorie Impraim; Kathy Lee; Kristy Berry; Chris Lee; Jacob Mueller; Hoda Khouri; John Gill; Terry R Utterback; Lisa A McDonald; Tamara V Feldblyum; Hamilton O Smith; J Craig Venter; Kenneth H Nealson; Claire M Fraser
Journal:  Nat Biotechnol       Date:  2002-10-07       Impact factor: 54.908
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  25 in total

1.  Architecture of the Tn7 posttransposition complex: an elaborate nucleoprotein structure.

Authors:  Jason W Holder; Nancy L Craig
Journal:  J Mol Biol       Date:  2010-06-09       Impact factor: 5.469

2.  Precise region and the character of the pathogenicity island in clinical Vibrio parahaemolyticus strains.

Authors:  Tomohiko Sugiyama; Tetsuya Iida; Kaori Izutsu; Kwon-Sam Park; Takeshi Honda
Journal:  J Bacteriol       Date:  2007-12-21       Impact factor: 3.490

3.  An improved method for oriT-directed cloning and functionalization of large bacterial genomic regions.

Authors:  Brian H Kvitko; Ian A McMillan; Herbert P Schweizer
Journal:  Appl Environ Microbiol       Date:  2013-06-07       Impact factor: 4.792

4.  Identification and characterization of a novel type III secretion system in trh-positive Vibrio parahaemolyticus strain TH3996 reveal genetic lineage and diversity of pathogenic machinery beyond the species level.

Authors:  Natsumi Okada; Tetsuya Iida; Kwon-Sam Park; Naohisa Goto; Teruo Yasunaga; Hirotaka Hiyoshi; Shigeaki Matsuda; Toshio Kodama; Takeshi Honda
Journal:  Infect Immun       Date:  2008-12-15       Impact factor: 3.441

Review 5.  Tn7 elements: engendering diversity from chromosomes to episomes.

Authors:  Adam R Parks; Joseph E Peters
Journal:  Plasmid       Date:  2008-11-01       Impact factor: 3.466

6.  Direct interaction between the TnsA and TnsB subunits controls the heteromeric Tn7 transposase.

Authors:  Ki Young Choi; Ying Li; Robert Sarnovsky; Nancy L Craig
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-14       Impact factor: 11.205

7.  Transposition into replicating DNA occurs through interaction with the processivity factor.

Authors:  Adam R Parks; Zaoping Li; Qiaojuan Shi; Roisin M Owens; Moonsoo M Jin; Joseph E Peters
Journal:  Cell       Date:  2009-08-21       Impact factor: 41.582

8.  Transposon Tn7 directs transposition into the genome of filamentous bacteriophage M13 using the element-encoded TnsE protein.

Authors:  Jessica A Finn; Adam R Parks; Joseph E Peters
Journal:  J Bacteriol       Date:  2007-10-05       Impact factor: 3.490

Review 9.  Targeted transposition with Tn7 elements: safe sites, mobile plasmids, CRISPR/Cas and beyond.

Authors:  Joseph E Peters
Journal:  Mol Microbiol       Date:  2019-09-18       Impact factor: 3.501

10.  The comprehensive microbial resource.

Authors:  Tanja Davidsen; Erin Beck; Anuradha Ganapathy; Robert Montgomery; Nikhat Zafar; Qi Yang; Ramana Madupu; Phil Goetz; Kevin Galinsky; Owen White; Granger Sutton
Journal:  Nucleic Acids Res       Date:  2009-11-05       Impact factor: 16.971
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