Literature DB >> 17189473

Mixed osmolytes: the degree to which one osmolyte affects the protein stabilizing ability of another.

Luis Marcelo F Holthauzen1, D Wayne Bolen.   

Abstract

Mixtures of organic osmolytes occur in cells of many organisms, raising the question of whether their actions on protein stability are independent or synergistic. To investigate this question it is desirable to develop a system that permits evaluation of the effect of one osmolyte on the efficacy of another to either force-fold or denature a protein. A means of evaluating the efficacy of an osmolyte is provided by its m-value, an experimental quantity that measures the ability of the osmolyte to force a protein to unfold or fold. An experimental system is presented that enables evaluations of the m-values of osmolytes in the presence and absence of a second osmolyte. The experimental system involves use of a marginally stable protein in 10 mM buffer (pH 7, 200 mM salt, and 34 degrees C) that is at the midpoint of its native to denatured transition. These conditions enable determination of m-values for protecting and denaturing osmolytes in the presence and absence of a second osmolyte, permitting assessment of the extent to which the two osmolytes affect each other's efficacy. The two osmolytes investigated in this work are the denaturing osmolyte, urea, and the protecting osmolyte, sarcosine. Results show unequivocally that neither osmolyte alters the efficacy of the other in forcing the protein to fold or unfold-the osmolytes act independently on the protein despite their combined concentrations being in the multi-molar range. These osmolytes avoid altering one another's efficacy at these high concentrations because the number of osmolyte interaction sites on the protein is large and the binding constants are quite small. Consequently, the site occupancies are low enough in number that the two osmolytes neither compete nor cooperate in interacting with the protein.

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Year:  2006        PMID: 17189473      PMCID: PMC2203298          DOI: 10.1110/ps.062610407

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  19 in total

1.  Studies of the ankyrin repeats of the Drosophila melanogaster Notch receptor. 1. Solution conformational and hydrodynamic properties.

Authors:  M E Zweifel; D Barrick
Journal:  Biochemistry       Date:  2001-12-04       Impact factor: 3.162

Review 2.  Protein stabilization by naturally occurring osmolytes.

Authors:  D W Bolen
Journal:  Methods Mol Biol       Date:  2001

3.  Fifty years of solvent denaturation.

Authors:  John A Schellman
Journal:  Biophys Chem       Date:  2002-05-02       Impact factor: 2.352

4.  The TonE/TonEBP pathway mediates tonicity-responsive regulation of UT-A urea transporter expression.

Authors:  Y Nakayama; T Peng; J M Sands; S M Bagnasco
Journal:  J Biol Chem       Date:  2000-12-08       Impact factor: 5.157

5.  Protein stability in mixed solvents: a balance of contact interaction and excluded volume.

Authors:  John A Schellman
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

6.  A molecular mechanism for osmolyte-induced protein stability.

Authors:  Timothy O Street; D Wayne Bolen; George D Rose
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-12       Impact factor: 11.205

7.  Urea and guanidine hydrochloride denaturation of ribonuclease, lysozyme, alpha-chymotrypsin, and beta-lactoglobulin.

Authors:  R F Greene; C N Pace
Journal:  J Biol Chem       Date:  1974-09-10       Impact factor: 5.157

8.  Studies of the ankyrin repeats of the Drosophila melanogaster Notch receptor. 2. Solution stability and cooperativity of unfolding.

Authors:  M E Zweifel; D Barrick
Journal:  Biochemistry       Date:  2001-12-04       Impact factor: 3.162

9.  Living with water stress: evolution of osmolyte systems.

Authors:  P H Yancey; M E Clark; S C Hand; R D Bowlus; G N Somero
Journal:  Science       Date:  1982-09-24       Impact factor: 47.728

10.  Measuring the stability of partly folded proteins using TMAO.

Authors:  Cecilia C Mello; Doug Barrick
Journal:  Protein Sci       Date:  2003-07       Impact factor: 6.725

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  26 in total

1.  An analysis of the molecular origin of osmolyte-dependent protein stability.

Authors:  Jörg Rösgen; B Montgomery Pettitt; David Wayne Bolen
Journal:  Protein Sci       Date:  2007-02-27       Impact factor: 6.725

2.  Anion modulation of the 1H/2H exchange rates in backbone amide protons monitored by NMR spectroscopy.

Authors:  Xavier Tadeo; David Castaño; Oscar Millet
Journal:  Protein Sci       Date:  2007-10-26       Impact factor: 6.725

3.  Anatomy of energetic changes accompanying urea-induced protein denaturation.

Authors:  Matthew Auton; Luis Marcelo F Holthauzen; D Wayne Bolen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-18       Impact factor: 11.205

Review 4.  Living with urea stress.

Authors:  Laishram R Singh; Tanveer Ali Dar; Faizan Ahmad
Journal:  J Biosci       Date:  2009-06       Impact factor: 1.826

5.  Osmolyte-induced conformational changes in the Hsp90 molecular chaperone.

Authors:  Timothy O Street; Kristin A Krukenberg; Jörg Rosgen; D Wayne Bolen; David A Agard
Journal:  Protein Sci       Date:  2010-01       Impact factor: 6.725

Review 6.  Conditionally disordered proteins: bringing the environment back into the fold.

Authors:  Andrew C Hausrath; Richard L Kingston
Journal:  Cell Mol Life Sci       Date:  2017-06-08       Impact factor: 9.261

7.  Combinations of Osmolytes, Including Monosaccharides, Disaccharides, and Sugar Alcohols Act in Concert During Cryopreservation to Improve Mesenchymal Stromal Cell Survival.

Authors:  Kathryn Pollock; Guanglin Yu; Ralph Moller-Trane; Marissa Koran; Peter I Dosa; David H McKenna; Allison Hubel
Journal:  Tissue Eng Part C Methods       Date:  2016-10-27       Impact factor: 3.056

8.  An overview of the importance of conformational flexibility in gene regulation by the transcription factors.

Authors:  Shagufta H Khan; Raj Kumar
Journal:  J Biophys       Date:  2010-02-04

9.  NFAT5, which protects against hypertonicity, is activated by that stress via structuring of its intrinsically disordered domain.

Authors:  Raj Kumar; Jenna F DuMond; Shagufta H Khan; E Brad Thompson; Yi He; Maurice B Burg; Joan D Ferraris
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-03       Impact factor: 11.205

10.  Hydrogen bonding progressively strengthens upon transfer of the protein urea-denatured state to water and protecting osmolytes.

Authors:  Luis Marcelo F Holthauzen; Jörg Rösgen; D Wayne Bolen
Journal:  Biochemistry       Date:  2010-02-16       Impact factor: 3.162

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