Literature DB >> 12829469

Protein stability in mixed solvents: a balance of contact interaction and excluded volume.

John A Schellman1.   

Abstract

Changes in excluded volume and contact interaction with the surface of a protein have been suggested as mechanisms for the changes in stability induced by cosolvents. The aim of the present paper is to present an analysis that combines both effects in a quantitative manner. The result is that both processes are present in both stabilizing and destabilizing interactions and neither can be ignored. Excluded volume was estimated using accessible surface area calculations of the kind introduced by Lee and Richards. The change in excluded volume on unfolding, deltaX, is quite large. For example, deltaX for ribonuclease is 6.7 L in urea and approximately 16 L in sucrose. The latter number is greater than the molar volume of the protein. Direct interaction with the protein is represented as the solvent exchange mechanism, which differs from ordinary association theory because of the weakness of the interaction and the high concentrations of cosolvents. The balance between the two effects and their contribution to overall stability are most simply presented as bar diagrams as in Fig. 3. Our finding for five proteins is that excluded volume contributes to the stabilization of the native structure and that contact interaction contributes to destabilization. This is true for five proteins and four cosolvents including both denaturants and osmolytes. Whether a substance stabilizes a protein or destabilizes it depends on the relative size of these two contributions. The constant for the cosolvent contact with the protein is remarkably uniform for four of the proteins, indicating a similarity of groups exposed during unfolding. One protein, staphylococcus nuclease, is anomalous in almost all respects. In general, the strength of the interaction with guanidinium is about twice that of urea, which is about twice that of trimethylamine-N-oxide and sucrose. Arguments are presented for the use of volume fractions in equilibrium equations and the ignoring of activity coefficients of the cosolvent. It is shown in the Appendix that both the excluded volume and the direct interaction can be extracted in a unified way from the McMillan-Mayer formula for the second virial coefficient.

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Year:  2003        PMID: 12829469      PMCID: PMC1303070          DOI: 10.1016/S0006-3495(03)74459-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  54 in total

Review 1.  The osmophobic effect: natural selection of a thermodynamic force in protein folding.

Authors:  D W Bolen; I V Baskakov
Journal:  J Mol Biol       Date:  2001-07-27       Impact factor: 5.469

Review 2.  Interpreting the effects of small uncharged solutes on protein-folding equilibria.

Authors:  P R Davis-Searles; A J Saunders; D A Erie; D J Winzor; G J Pielak
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001

3.  Thermodynamics of interactions of urea and guanidinium salts with protein surface: relationship between solute effects on protein processes and changes in water-accessible surface area.

Authors:  E S Courtenay; M W Capp; M T Record
Journal:  Protein Sci       Date:  2001-12       Impact factor: 6.725

4.  On the conformational stability of globular proteins. The effects of various electrolytes and nonelectrolytes on the thermal ribonuclease transition.

Authors:  P H Von Hippel; K Y Wong
Journal:  J Biol Chem       Date:  1965-10       Impact factor: 5.157

5.  Proteins in 6-M guanidine hydrochloride. Demonstration of random coil behavior.

Authors:  C Tanford; K Kawahara; S Lapanje
Journal:  J Biol Chem       Date:  1966-04-25       Impact factor: 5.157

6.  Viscosity and density of aqueous solutions of urea and guanidine hydrochloride.

Authors:  K Kawahara; C Tanford
Journal:  J Biol Chem       Date:  1966-07-10       Impact factor: 5.157

7.  Evidence for residual structure in acid- and heat-denatured proteins.

Authors:  K C Aune; A Salahuddin; M H Zarlengo; C Tanford
Journal:  J Biol Chem       Date:  1967-10-10       Impact factor: 5.157

8.  Ionic partial molal volumes and electrostrictions in aqueous solution.

Authors:  P Mukerjee
Journal:  J Phys Chem       Date:  1966-08

9.  Thermodynamic analysis of interactions between denaturants and protein surface exposed on unfolding: interpretation of urea and guanidinium chloride m-values and their correlation with changes in accessible surface area (ASA) using preferential interaction coefficients and the local-bulk domain model.

Authors:  E S Courtenay; M W Capp; R M Saecker; M T Record
Journal:  Proteins       Date:  2000

Review 10.  NEUTRAL SALTS: THE GENERALITY OF THEIR EFFECTS ON THE STABILITY OF MACROMOLECULAR CONFORMATIONS.

Authors:  P H VONHIPPEL; K Y WONG
Journal:  Science       Date:  1964-08-07       Impact factor: 47.728

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  66 in total

1.  Sodium perchlorate effects on the helical stability of a mainly alanine peptide.

Authors:  Eliana K Asciutto; Ignacio J General; Kan Xiong; Kang Xiong; Sanford A Asher; Jeffry D Madura
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

2.  Predicting the energetics of osmolyte-induced protein folding/unfolding.

Authors:  Matthew Auton; D Wayne Bolen
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-07       Impact factor: 11.205

3.  Local compressibilities of proteins: comparison of optical experiments and simulations for horse heart cytochrome-c.

Authors:  Christina Scharnagl; Maria Reif; Josef Friedrich
Journal:  Biophys J       Date:  2005-04-15       Impact factor: 4.033

4.  Protein folding, stability, and solvation structure in osmolyte solutions.

Authors:  Jörg Rösgen; B Montgomery Pettitt; David Wayne Bolen
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

5.  A contribution to the theory of preferential interaction coefficients.

Authors:  J Michael Schurr; David P Rangel; Sergio R Aragon
Journal:  Biophys J       Date:  2005-07-29       Impact factor: 4.033

6.  Translational-entropy gain of solvent upon protein folding.

Authors:  Yuichi Harano; Masahiro Kinoshita
Journal:  Biophys J       Date:  2005-07-29       Impact factor: 4.033

7.  Toward an accurate theoretical framework for describing ensembles for proteins under strongly denaturing conditions.

Authors:  Hoang T Tran; Rohit V Pappu
Journal:  Biophys J       Date:  2006-06-09       Impact factor: 4.033

8.  L-Arginine increases the solubility of unfolded species of hen egg white lysozyme.

Authors:  Ravi Charan Reddy K; Hauke Lilie; Rainer Rudolph; Christian Lange
Journal:  Protein Sci       Date:  2005-03-01       Impact factor: 6.725

Review 9.  Macromolecular Crowding In Vitro, In Vivo, and In Between.

Authors:  Germán Rivas; Allen P Minton
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

10.  Thermodynamic and structural basis for relaxation of specificity in protein-DNA recognition.

Authors:  Paul J Sapienza; Tianyi Niu; Michael R Kurpiewski; Arabela Grigorescu; Linda Jen-Jacobson
Journal:  J Mol Biol       Date:  2013-09-14       Impact factor: 5.469

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