Literature DB >> 17148371

Mutations of intermediate effect are responsible for adaptation in evolving Pseudomonas fluorescens populations.

Rowan D H Barrett1, R Craig MacLean, Graham Bell.   

Abstract

The fixation of a beneficial mutation represents the first step in adaptation, and the average effect of such mutations is therefore a fundamental property of evolving populations. It is nevertheless poorly characterized because the rarity of beneficial mutations makes it difficult to obtain reliable estimates of fitness. We obtained 68 genotypes each containing a single fixed beneficial mutation from experimental populations of Pseudomonas fluorescens, evolving in medium with serine as the sole carbon source and estimated the selective advantage of each by competition with the ancestor. The distribution of selection coefficients is modal and closely resembles the Weibull distribution. The average selection coefficient (2.1) and beneficial mutation rate (3.8x10(-8)) are high relative to previous studies, possibly because the ancestral population grows poorly in serine-limited medium. Our experiment suggests that the initial stages of adaptation to stressful environments will involve the substitution of mutations with large effect on fitness.

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Year:  2006        PMID: 17148371      PMCID: PMC1618891          DOI: 10.1098/rsbl.2006.0439

Source DB:  PubMed          Journal:  Biol Lett        ISSN: 1744-9561            Impact factor:   3.703


  16 in total

1.  Fitness effects of advantageous mutations in evolving Escherichia coli populations.

Authors:  M Imhof; C Schlotterer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  The genetics of species differences.

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3.  Evaluating the impact of population bottlenecks in experimental evolution.

Authors:  Lindi M Wahl; Philip J Gerrish; Ivan Saika-Voivod
Journal:  Genetics       Date:  2002-10       Impact factor: 4.562

4.  The population genetics of adaptation: the adaptation of DNA sequences.

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Journal:  Evolution       Date:  2002-07       Impact factor: 3.694

5.  Fitness effects of fixed beneficial mutations in microbial populations.

Authors:  Daniel E Rozen; J Arjan G M de Visser; Philip J Gerrish
Journal:  Curr Biol       Date:  2002-06-25       Impact factor: 10.834

6.  Mutational effects on the clonal interference phenomenon.

Authors:  Paulo R A Campos; Viviane M de Oliveira
Journal:  Evolution       Date:  2004-05       Impact factor: 3.694

7.  The speed of adaptation in large asexual populations.

Authors:  Claus O Wilke
Journal:  Genetics       Date:  2004-08       Impact factor: 4.562

8.  Experimental evolution of Pseudomonas fluorescens in simple and complex environments.

Authors:  Rowan D H Barrett; R Craig MacLean; Graham Bell
Journal:  Am Nat       Date:  2005-08-05       Impact factor: 3.926

9.  The fate of competing beneficial mutations in an asexual population.

Authors:  P J Gerrish; R E Lenski
Journal:  Genetica       Date:  1998       Impact factor: 1.082

10.  The limits of selection during maize domestication.

Authors:  R L Wang; A Stec; J Hey; L Lukens; J Doebley
Journal:  Nature       Date:  1999-03-18       Impact factor: 49.962

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  37 in total

1.  Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations.

Authors:  Benjamin H Good; Igor M Rouzine; Daniel J Balick; Oskar Hallatschek; Michael M Desai
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-27       Impact factor: 11.205

2.  Inference for one-step beneficial mutations using next generation sequencing.

Authors:  Andrzej J Wojtowicz; Craig R Miller; Paul Joyce
Journal:  Stat Appl Genet Mol Biol       Date:  2015-02

3.  The distribution of beneficial mutant effects under strong selection.

Authors:  Rowan D H Barrett; Leithen K M'Gonigle; Sarah P Otto
Journal:  Genetics       Date:  2006-10-08       Impact factor: 4.562

4.  Diminishing returns from beneficial mutations and pervasive epistasis shape the fitness landscape for rifampicin resistance in Pseudomonas aeruginosa.

Authors:  R C MacLean; G G Perron; A Gardner
Journal:  Genetics       Date:  2010-09-27       Impact factor: 4.562

5.  Genomewide patterns of substitution in adaptively evolving populations of the RNA bacteriophage MS2.

Authors:  Andrea J Betancourt
Journal:  Genetics       Date:  2009-02-02       Impact factor: 4.562

6.  From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains.

Authors:  Ave Tooming-Klunderud; Hanne Sogge; Trine Ballestad Rounge; Alexander J Nederbragt; Karin Lagesen; Gernot Glöckner; Paul K Hayes; Thomas Rohrlack; Kjetill S Jakobsen
Journal:  Appl Environ Microbiol       Date:  2013-08-30       Impact factor: 4.792

7.  The role of advantageous mutations in enhancing the evolution of a recombination modifier.

Authors:  Matthew Hartfield; Sarah P Otto; Peter D Keightley
Journal:  Genetics       Date:  2010-02-05       Impact factor: 4.562

8.  Phenotypic effect of mutations in evolving populations of RNA molecules.

Authors:  Michael Stich; Ester Lázaro; Susanna C Manrubia
Journal:  BMC Evol Biol       Date:  2010-02-17       Impact factor: 3.260

9.  The properties of adaptive walks in evolving populations of fungus.

Authors:  Sijmen E Schoustra; Thomas Bataillon; Danna R Gifford; Rees Kassen
Journal:  PLoS Biol       Date:  2009-11-24       Impact factor: 8.029

Review 10.  Fluctuating selection: the perpetual renewal of adaptation in variable environments.

Authors:  Graham Bell
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-01-12       Impact factor: 6.237

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