Literature DB >> 17144676

ASFV DNA polymerse X is extremely error-prone under diverse assay conditions and within multiple DNA sequence contexts.

Brandon J Lamarche1, Sandeep Kumar, Ming-Daw Tsai.   

Abstract

We previously demonstrated that the DNA repair system encoded by the African swine fever virus (ASFV) is both extremely error-prone during the single-nucleotide gap-filling step (catalyzed by ASFV DNA polymerase X) and extremely error-tolerant during the nick-sealing step (catalyzed by ASFV DNA ligase). On the basis of these findings we have suggested that at least some of the diversity known to exist among ASFV isolates may be a consequence of mutagenic DNA repair, wherein damaged nucleotides are replaced with undamaged but incorrect nucleotides by Pol X and the resultant mismatched nicks are sealed by ASFV DNA ligase. Recently, this hypothesis appeared to be discredited by Salas and co-workers [(2003) J. Mol. Biol. 326, 1403-1412], who reported the fidelity of Pol X to be, on average, 2 orders of magnitude higher than what we previously published. In an effort to address this discrepancy and provide a definitive conclusion about the fidelity of Pol X, herein we examine the fidelity of Pol X-catalyzed single-nucleotide gap-filling in both the steady state and the pre-steady state under a diverse array of assay conditions (varying pH and ionic strength) and within different DNA sequence contexts. These studies corroborate our previously published data (demonstrating the low fidelity of Pol X to be independent of assay condition/sequence context), do not reproduce the data of Salas et al., and therefore confirm Pol X to be one of the most error-prone polymerases known. These results are discussed in light of ASFV biology and the mutagenic DNA repair hypothesis described above.

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Year:  2006        PMID: 17144676      PMCID: PMC2584803          DOI: 10.1021/bi0613325

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  50 in total

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Journal:  Virology       Date:  1992-06       Impact factor: 3.616

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Journal:  Virus Res       Date:  1991-08       Impact factor: 3.303

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Journal:  Am J Vet Res       Date:  1984-02       Impact factor: 1.156

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Journal:  J Biol Chem       Date:  1992-12-05       Impact factor: 5.157

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Journal:  Nucleic Acids Res       Date:  1990-07-11       Impact factor: 16.971

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Journal:  J Gen Virol       Date:  1977-03       Impact factor: 3.891

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  8 in total

1.  Modulation of the structure, catalytic activity, and fidelity of African swine fever virus DNA polymerase X by a reversible disulfide switch.

Authors:  Markus W Voehler; Robert L Eoff; W Hayes McDonald; F Peter Guengerich; Michael P Stone
Journal:  J Biol Chem       Date:  2009-05-05       Impact factor: 5.157

2.  How DNA polymerase X preferentially accommodates incoming dATP opposite 8-oxoguanine on the template.

Authors:  Benedetta Sampoli Benítez; Zachary R Barbati; Karunesh Arora; Jasmina Bogdanovic; Tamar Schlick
Journal:  Biophys J       Date:  2013-12-03       Impact factor: 4.033

3.  Involvement of the reparative DNA polymerase Pol X of African swine fever virus in the maintenance of viral genome stability in vivo.

Authors:  Modesto Redrejo-Rodríguez; Javier M Rodríguez; Cristina Suárez; José Salas; María L Salas
Journal:  J Virol       Date:  2013-07-03       Impact factor: 5.103

4.  Relationship between conformational changes in pol lambda's active site upon binding incorrect nucleotides and mismatch incorporation rates.

Authors:  Meredith C Foley; Tamar Schlick
Journal:  J Phys Chem B       Date:  2009-10-01       Impact factor: 2.991

5.  Bioorthogonal information storage in L-DNA with a high-fidelity mirror-image Pfu DNA polymerase.

Authors:  Chuyao Fan; Qiang Deng; Ting F Zhu
Journal:  Nat Biotechnol       Date:  2021-07-29       Impact factor: 68.164

6.  Altered order of substrate binding by DNA polymerase X from African Swine Fever virus.

Authors:  Sandeep Kumar; Marina Bakhtina; Ming-Daw Tsai
Journal:  Biochemistry       Date:  2008-07-04       Impact factor: 3.162

Review 7.  Structures and Functional Diversities of ASFV Proteins.

Authors:  Guoguo Wang; Mengjia Xie; Wei Wu; Zhongzhou Chen
Journal:  Viruses       Date:  2021-10-21       Impact factor: 5.048

8.  Evaluation of an ASFV RNA Helicase Gene A859L for Virus Replication and Swine Virulence.

Authors:  Elizabeth Ramirez-Medina; Elizabeth A Vuono; Sarah Pruitt; Ayushi Rai; Nallely Espinoza; Lauro Velazquez-Salinas; Douglas P Gladue; Manuel V Borca
Journal:  Viruses       Date:  2021-12-21       Impact factor: 5.048

  8 in total

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