Literature DB >> 2374708

High fidelity DNA synthesis by the Thermus aquaticus DNA polymerase.

K A Eckert1, T A Kunkel.   

Abstract

We demonstrate that despite lacking a 3'----5' proofreading exonuclease, the Thermus aquaticus (Taq) DNA polymerase can catalyze highly accurate DNA synthesis in vitro. Under defined reaction conditions, the error rate per nucleotide polymerized at 70 degrees C can be as low as 10(-5) for base substitution errors and 10(-6) for frameshift errors. The frequency of mutations produced during a single round of DNA synthesis of the lac Z alpha gene by Taq polymerase responds to changes in dNTP concentration, pH, and the concentration of MgCl2 relative to the total concentration of deoxynucleotide triphosphates present in the reaction. Both base substitution and frameshift error rates of less than 1/100,000 were observed at pH 5-6 (70 degrees C) or when MgCl2 and deoxynucleotide triphosphates were present at equimolar concentrations. These high fidelity reaction conditions for DNA synthesis by the Taq polymerase may be useful for specialized uses of DNA amplified by the polymerase chain reaction.

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Year:  1990        PMID: 2374708      PMCID: PMC331072          DOI: 10.1093/nar/18.13.3739

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  22 in total

1.  Exonucleolytic proofreading by calf thymus DNA polymerase delta.

Authors:  T A Kunkel; R D Sabatino; R A Bambara
Journal:  Proc Natl Acad Sci U S A       Date:  1987-07       Impact factor: 11.205

Review 2.  The role of metal ions in the mechanisms of DNA and RNA polymerases.

Authors:  A S Mildvan; L A Loeb
Journal:  CRC Crit Rev Biochem       Date:  1979

Review 3.  Fidelity of DNA synthesis.

Authors:  L A Loeb; T A Kunkel
Journal:  Annu Rev Biochem       Date:  1982       Impact factor: 23.643

4.  A cryptic proofreading 3'----5' exonuclease associated with the polymerase subunit of the DNA polymerase-primase from Drosophila melanogaster.

Authors:  S M Cotterill; M E Reyland; L A Loeb; I R Lehman
Journal:  Proc Natl Acad Sci U S A       Date:  1987-08       Impact factor: 11.205

5.  The base substitution fidelity of eucaryotic DNA polymerases. Mispairing frequencies, site preferences, insertion preferences, and base substitution by dislocation.

Authors:  T A Kunkel; P S Alexander
Journal:  J Biol Chem       Date:  1986-01-05       Impact factor: 5.157

6.  Processivity of the DNA polymerase alpha-primase complex from calf thymus.

Authors:  K T Hohn; F Grosse
Journal:  Biochemistry       Date:  1987-05-19       Impact factor: 3.162

7.  Exonucleolytic proofreading enhances the fidelity of DNA synthesis by chick embryo DNA polymerase-gamma.

Authors:  T A Kunkel; A Soni
Journal:  J Biol Chem       Date:  1988-03-25       Impact factor: 5.157

8.  Frameshift mutagenesis by eucaryotic DNA polymerases in vitro.

Authors:  T A Kunkel
Journal:  J Biol Chem       Date:  1986-10-15       Impact factor: 5.157

9.  The mutational specificity of DNA polymerases-alpha and -gamma during in vitro DNA synthesis.

Authors:  T A Kunkel
Journal:  J Biol Chem       Date:  1985-10-15       Impact factor: 5.157

10.  On the fidelity of DNA replication: manganese mutagenesis in vitro.

Authors:  R A Beckman; A S Mildvan; L A Loeb
Journal:  Biochemistry       Date:  1985-10-08       Impact factor: 3.162

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  98 in total

1.  Mutations affecting motifs of unknown function in the central domain of nitrogen regulatory protein C.

Authors:  J Li; L Passaglia; I Rombel; D Yan; S Kustu
Journal:  J Bacteriol       Date:  1999-09       Impact factor: 3.490

2.  Subunit interactions and glutamine utilization by Escherichia coli imidazole glycerol phosphate synthase.

Authors:  T J Klem; Y Chen; V J Davisson
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

Review 3.  The use of hydrolysis and hairpin probes in real-time PCR.

Authors:  Susan M McChlery; Stuart C Clarke
Journal:  Mol Biotechnol       Date:  2003-11       Impact factor: 2.695

4.  Taq DNA polymerase slippage mutation rates measured by PCR and quasi-likelihood analysis: (CA/GT)n and (A/T)n microsatellites.

Authors:  Deepali Shinde; Yinglei Lai; Fengzhu Sun; Norman Arnheim
Journal:  Nucleic Acids Res       Date:  2003-02-01       Impact factor: 16.971

5.  Translation of the rat LINE bicistronic RNAs in vitro involves ribosomal reinitiation instead of frameshifting.

Authors:  H Ilves; O Kahre; M Speek
Journal:  Mol Cell Biol       Date:  1992-09       Impact factor: 4.272

6.  Genotypic analysis of N-ethyl-N-nitrosourea-induced mutations by Taq I restriction fragment length polymorphism/polymerase chain reaction in the c-H-ras1 gene.

Authors:  S M Chiocca; M S Sandy; P A Cerutti
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-15       Impact factor: 11.205

7.  Unusually high frequency of reconstitution of long terminal repeats in U3-minus retrovirus vectors by DNA recombination or gene conversion.

Authors:  P Olson; H M Temin; R Dornburg
Journal:  J Virol       Date:  1992-03       Impact factor: 5.103

8.  STITCH: algorithm to splice, trim, identify, track, and capture the uniqueness of 16S rRNAs sequence pairs using public or in-house database.

Authors:  Dianhui Zhu; Parag A Vaishampayan; Kasthuri Venkateswaran; George E Fox
Journal:  Microb Ecol       Date:  2010-11-27       Impact factor: 4.552

9.  Kinetic analysis of the unique error signature of human DNA polymerase ν.

Authors:  Mercedes E Arana; Olga Potapova; Thomas A Kunkel; Catherine M Joyce
Journal:  Biochemistry       Date:  2011-10-31       Impact factor: 3.162

10.  A rearranged genomic segment 11 is common to different human rotaviruses.

Authors:  S Giambiagi; I González Rodríguez; J Gómez; O Burrone
Journal:  Arch Virol       Date:  1994       Impact factor: 2.574

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