Literature DB >> 17142272

Molecular dynamics simulations of SOPS and sphingomyelin bilayers containing cholesterol.

Shreyas Y Bhide1, Zhancheng Zhang, Max L Berkowitz.   

Abstract

We performed a molecular dynamics simulation of an asymmetric bilayer that contained different lipid mixtures in its outer and inner leaflets. The outer leaflet contained a mixture of sphingomyelin (SM) with cholesterol and the inner leaflet a mixture of stearoyl-oleoyl-phosphatidylserine (SOPS) with cholesterol. For comparison purposes, we also performed two simulations on symmetric bilayers: the first simulation was performed on a bilayer containing a binary mixture of SOPS with cholesterol; the second contained a mixture of SM with cholesterol. We studied the hydrogen-bonding network of the bilayers in our simulations and the difference in the network properties in the monolayers either with SM or SOPS. We observed that in the asymmetric bilayer the properties of monolayers were the same as in the corresponding monolayers in the symmetric bilayers.

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Year:  2006        PMID: 17142272      PMCID: PMC1783896          DOI: 10.1529/biophysj.106.096214

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  35 in total

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Authors:  John F Hancock
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Review 3.  Condensed complexes of cholesterol and phospholipids.

Authors:  Harden M McConnell; Arun Radhakrishnan
Journal:  Biochim Biophys Acta       Date:  2003-03-10

4.  Quantitative analysis of phospholipids in functionally important membrane domains from RBL-2H3 mast cells using tandem high-resolution mass spectrometry.

Authors:  E K Fridriksson; P A Shipkova; E D Sheets; D Holowka; B Baird; F W McLafferty
Journal:  Biochemistry       Date:  1999-06-22       Impact factor: 3.162

5.  Influence of chain length and unsaturation on sphingomyelin bilayers.

Authors:  Perttu S Niemelä; Marja T Hyvönen; Ilpo Vattulainen
Journal:  Biophys J       Date:  2005-11-11       Impact factor: 4.033

6.  Molecular dynamics simulations of phospholipid bilayers with cholesterol.

Authors:  Christofer Hofsäss; Erik Lindahl; Olle Edholm
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

7.  Simulation of the early stages of nano-domain formation in mixed bilayers of sphingomyelin, cholesterol, and dioleylphosphatidylcholine.

Authors:  Sagar A Pandit; Eric Jakobsson; H L Scott
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

8.  Restatement of order parameters in biomembranes: calculation of C-C bond order parameters from C-D quadrupolar splittings.

Authors:  J P Douliez; A Léonard; E J Dufourc
Journal:  Biophys J       Date:  1995-05       Impact factor: 4.033

9.  Molecular dynamics simulation of a palmitoyl-oleoyl phosphatidylserine bilayer with Na+ counterions and NaCl.

Authors:  Parag Mukhopadhyay; Luca Monticelli; D Peter Tieleman
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

10.  Structure and fluctuations of charged phosphatidylserine bilayers in the absence of salt.

Authors:  Horia I Petrache; Stephanie Tristram-Nagle; Klaus Gawrisch; Daniel Harries; V Adrian Parsegian; John F Nagle
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

View more
  8 in total

1.  Accurate In Silico Modeling of Asymmetric Bilayers Based on Biophysical Principles.

Authors:  Milka Doktorova; Harel Weinstein
Journal:  Biophys J       Date:  2018-09-15       Impact factor: 4.033

Review 2.  Specificity of intramembrane protein-lipid interactions.

Authors:  Francesc-Xabier Contreras; Andreas Max Ernst; Felix Wieland; Britta Brügger
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3.  Elastic moduli of normal and cancer cell membranes revealed by molecular dynamics simulations.

Authors:  Hoang Linh Nguyen; Viet Hoang Man; Mai Suan Li; Philippe Derreumaux; Junmei Wang; Phuong H Nguyen
Journal:  Phys Chem Chem Phys       Date:  2022-03-09       Impact factor: 3.676

4.  Test of the Gouy-Chapman theory for a charged lipid membrane against explicit-solvent molecular dynamics simulations.

Authors:  Myunggi Yi; Hugh Nymeyer; Huan-Xiang Zhou
Journal:  Phys Rev Lett       Date:  2008-07-18       Impact factor: 9.161

5.  Disturb or stabilize? A molecular dynamics study of the effects of resorcinolic lipids on phospholipid bilayers.

Authors:  Magdalena E Siwko; Alex H de Vries; Alan E Mark; Arkadiusz Kozubek; Siewert J Marrink
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

Review 6.  Multiscale simulations of heterogeneous model membranes.

Authors:  Sagar A Pandit; H Larry Scott
Journal:  Biochim Biophys Acta       Date:  2008-09-23

7.  Cholesterol packing around lipids with saturated and unsaturated chains: a simulation study.

Authors:  Sagar A Pandit; See-Wing Chiu; Eric Jakobsson; Ananth Grama; H L Scott
Journal:  Langmuir       Date:  2008-06-03       Impact factor: 3.882

Review 8.  Asymmetric lipid membranes: towards more realistic model systems.

Authors:  Drew Marquardt; Barbara Geier; Georg Pabst
Journal:  Membranes (Basel)       Date:  2015-05-06
  8 in total

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