Literature DB >> 15339797

Simulation of the early stages of nano-domain formation in mixed bilayers of sphingomyelin, cholesterol, and dioleylphosphatidylcholine.

Sagar A Pandit1, Eric Jakobsson, H L Scott.   

Abstract

It is known from experimental studies that lipid bilayers composed of unsaturated phospholipids, sphingomyelin, and cholesterol contain microdomains rich in sphingomyelin and cholesterol. These domains are similar to "rafts" isolated from cell membranes, although the latter are much smaller in lateral size. Such domain formation can be a result of very specific and subtle lipid-lipid interactions. To identify and study these interactions, we have performed two molecular dynamics simulations, of 200-ns duration, of dioleylphosphatidylcholine (DOPC), sphingomyelin (SM), and cholesterol (Chol) systems, a 1:1:1 mixture of DOPC/SM/Chol, and a 1:1 mixture of DOPC/SM. The simulations show initial stages of the onset of spontaneous phase-separated domains in the systems. On the simulation timescale cholesterol favors a position at the interface between the ordered SM region and the disordered DOPC region in the ternary system and accelerates the process of domain formation. We find that the smooth alpha-face of Chol preferentially packs next to SM molecules. Based on a comparative analysis of interaction energies, we find that Chol molecules do not show a preference for SM or DOPC. We conclude that Chol molecules assist in the process of domain formation and the process is driven by entropic factors rather than differences in interaction energies.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15339797      PMCID: PMC1304799          DOI: 10.1529/biophysj.104.046078

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  51 in total

1.  A requirement for lipid rafts in B cell receptor induced Ca(2+) flux.

Authors:  M J Aman; K S Ravichandran
Journal:  Curr Biol       Date:  2000-04-06       Impact factor: 10.834

2.  Molecular dynamics simulations of stratum corneum lipid models: fatty acids and cholesterol.

Authors:  M Höltje; T Förster; B Brandt; T Engels; W von Rybinski; H D Höltje
Journal:  Biochim Biophys Acta       Date:  2001-03-09

3.  Phosphatidylinositol 4,5-bisphosphate induces actin-based movement of raft-enriched vesicles through WASP-Arp2/3.

Authors:  A L Rozelle; L M Machesky; M Yamamoto; M H Driessens; R H Insall; M G Roth; K Luby-Phelps; G Marriott; A Hall; H L Yin
Journal:  Curr Biol       Date:  2000-03-23       Impact factor: 10.834

4.  Transmembrane phosphoprotein Cbp regulates the activities of Src-family tyrosine kinases.

Authors:  M Kawabuchi; Y Satomi; T Takao; Y Shimonishi; S Nada; K Nagai; A Tarakhovsky; M Okada
Journal:  Nature       Date:  2000-04-27       Impact factor: 49.962

5.  Membrane raft microdomains mediate front-rear polarity in migrating cells.

Authors:  S Mañes; E Mira; C Gómez-Moutón; R A Lacalle; P Keller; J P Labrador; C Martínez-A
Journal:  EMBO J       Date:  1999-11-15       Impact factor: 11.598

Review 6.  Structure of lipid bilayers.

Authors:  J F Nagle; S Tristram-Nagle
Journal:  Biochim Biophys Acta       Date:  2000-11-10

7.  Cholesterol effects on the phosphatidylcholine bilayer polar region: a molecular simulation study.

Authors:  M Pasenkiewicz-Gierula; T Róg; K Kitamura; A Kusumi
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

8.  Structure of dipalmitoylphosphatidylcholine/cholesterol bilayer at low and high cholesterol concentrations: molecular dynamics simulation.

Authors:  A M Smondyrev; M L Berkowitz
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

9.  Distinct membrane domains on endosomes in the recycling pathway visualized by multicolor imaging of Rab4, Rab5, and Rab11.

Authors:  B Sönnichsen; S De Renzis; E Nielsen; J Rietdorf; M Zerial
Journal:  J Cell Biol       Date:  2000-05-15       Impact factor: 10.539

10.  Sphingolipid-cholesterol rafts diffuse as small entities in the plasma membrane of mammalian cells.

Authors:  A Pralle; P Keller; E L Florin; K Simons; J K Hörber
Journal:  J Cell Biol       Date:  2000-03-06       Impact factor: 10.539

View more
  52 in total

1.  Self-consistent mean-field model for palmitoyloleoylphosphatidylcholine-palmitoyl sphingomyelin-cholesterol lipid bilayers.

Authors:  Paul W Tumaneng; Sagar A Pandit; Guijun Zhao; H L Scott
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-03-31

Review 2.  Lipid rafts: contentious only from simplistic standpoints.

Authors:  John F Hancock
Journal:  Nat Rev Mol Cell Biol       Date:  2006-06       Impact factor: 94.444

3.  A structurally relevant coarse-grained model for cholesterol.

Authors:  K R Hadley; C McCabe
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

4.  Comparison of three ternary lipid bilayer mixtures: FRET and ESR reveal nanodomains.

Authors:  Frederick A Heberle; Jing Wu; Shih Lin Goh; Robin S Petruzielo; Gerald W Feigenson
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

5.  Insight into the putative specific interactions between cholesterol, sphingomyelin, and palmitoyl-oleoyl phosphatidylcholine.

Authors:  Jussi Aittoniemi; Perttu S Niemelä; Marja T Hyvönen; Mikko Karttunen; Ilpo Vattulainen
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

Review 6.  Lipid rafts, fluid/fluid phase separation, and their relevance to plasma membrane structure and function.

Authors:  Prabuddha Sengupta; Barbara Baird; David Holowka
Journal:  Semin Cell Dev Biol       Date:  2007-07-24       Impact factor: 7.727

7.  Structural and dynamic effects of cholesterol at preferred sites of interaction with rhodopsin identified from microsecond length molecular dynamics simulations.

Authors:  George Khelashvili; Alan Grossfield; Scott E Feller; Michael C Pitman; Harel Weinstein
Journal:  Proteins       Date:  2009-08-01

Review 8.  GM1 Ganglioside: Past Studies and Future Potential.

Authors:  Massimo Aureli; Laura Mauri; Maria Grazia Ciampa; Alessandro Prinetti; Gino Toffano; Cynthia Secchieri; Sandro Sonnino
Journal:  Mol Neurobiol       Date:  2015-03-12       Impact factor: 5.590

9.  Lateral organization in lipid-cholesterol mixed bilayers.

Authors:  Sagar A Pandit; George Khelashvili; Eric Jakobsson; Ananth Grama; H L Scott
Journal:  Biophys J       Date:  2006-10-27       Impact factor: 4.033

10.  Cholesterol surrogates: a comparison of cholesterol and 16:0 ceramide in POPC bilayers.

Authors:  Sagar A Pandit; See-Wing Chiu; Eric Jakobsson; Ananth Grama; H L Scott
Journal:  Biophys J       Date:  2006-10-27       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.