Literature DB >> 17139278

DNA replication timing: random thoughts about origin firing.

Nicholas Rhind1.   

Abstract

Regions of metazoan genomes replicate at defined times within S phase. This observation suggests that replication origins fire with a defined timing pattern that remains the same from cycle to cycle. However, an alterative model based on the stochastic firing of origins may also explain replication timing. This model assumes varying origin efficiency instead of a strict origin-timing programme. Here, we discuss the evidence for both models.

Mesh:

Year:  2006        PMID: 17139278      PMCID: PMC2861037          DOI: 10.1038/ncb1206-1313

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.824


  40 in total

1.  Mechanisms ensuring rapid and complete DNA replication despite random initiation in Xenopus early embryos.

Authors:  I Lucas; M Chevrier-Miller; J M Sogo; O Hyrien
Journal:  J Mol Biol       Date:  2000-02-25       Impact factor: 5.469

Review 2.  Replication origins in metazoan chromosomes: fact or fiction?

Authors:  M L DePamphilis
Journal:  Bioessays       Date:  1999-01       Impact factor: 4.345

3.  [On the regulation of DNA synthesis in bacteria: the hypothesis of the replicon].

Authors:  F JACOB; S BRENNER
Journal:  C R Hebd Seances Acad Sci       Date:  1963-01-02

4.  Replication timing of human chromosome 6.

Authors:  Kathryn Woodfine; David M Beare; Koichi Ichimura; Silvana Debernardi; Andrew J Mungall; Heike Fiegler; V Peter Collins; Nigel P Carter; Ian Dunham
Journal:  Cell Cycle       Date:  2005-01-05       Impact factor: 4.534

5.  Coordination of replication and transcription along a Drosophila chromosome.

Authors:  David M MacAlpine; Heather K Rodríguez; Stephen P Bell
Journal:  Genes Dev       Date:  2004-12-15       Impact factor: 11.361

6.  DNA replication origins fire stochastically in fission yeast.

Authors:  Prasanta K Patel; Benoit Arcangioli; Stephen P Baker; Aaron Bensimon; Nicholas Rhind
Journal:  Mol Biol Cell       Date:  2005-10-26       Impact factor: 4.138

Review 7.  DNA replication and progression through S phase.

Authors:  David Y Takeda; Anindya Dutta
Journal:  Oncogene       Date:  2005-04-18       Impact factor: 9.867

Review 8.  Shaping time: chromatin structure and the DNA replication programme.

Authors:  Anne D Donaldson
Journal:  Trends Genet       Date:  2005-08       Impact factor: 11.639

9.  ATM and ATR check in on origins: a dynamic model for origin selection and activation.

Authors:  David Shechter; Jean Gautier
Journal:  Cell Cycle       Date:  2005-02-13       Impact factor: 4.534

10.  ATR, Claspin and the Rad9-Rad1-Hus1 complex regulate Chk1 and Cdc25A in the absence of DNA damage.

Authors:  Claus Storgaard Sørensen; Randi G Syljuåsen; Jiri Lukas; Jiri Bartek
Journal:  Cell Cycle       Date:  2004-07-13       Impact factor: 4.534

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  73 in total

Review 1.  Organization of DNA replication.

Authors:  Vadim O Chagin; Jeffrey H Stear; M Cristina Cardoso
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-04       Impact factor: 10.005

Review 2.  The elusive determinants of replication origins.

Authors:  Silvia Costa; J Julian Blow
Journal:  EMBO Rep       Date:  2007-04       Impact factor: 8.807

Review 3.  Integrating S-phase checkpoint signaling with trans-lesion synthesis of bulky DNA adducts.

Authors:  Laura R Barkley; Haruo Ohmori; Cyrus Vaziri
Journal:  Cell Biochem Biophys       Date:  2007       Impact factor: 2.194

Review 4.  Cell cycle regulation of DNA replication.

Authors:  R A Sclafani; T M Holzen
Journal:  Annu Rev Genet       Date:  2007       Impact factor: 16.830

5.  Stochastic hybrid modeling of DNA replication across a complete genome.

Authors:  J Lygeros; K Koutroumpas; S Dimopoulos; I Legouras; P Kouretas; C Heichinger; P Nurse; Z Lygerou
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-19       Impact factor: 11.205

Review 6.  Epigenetic landscape for initiation of DNA replication.

Authors:  Vladimir V Sherstyuk; Alexander I Shevchenko; Suren M Zakian
Journal:  Chromosoma       Date:  2013-12-17       Impact factor: 4.316

7.  Replication timing of large Sorex granarius (Soricidae, Eulipotyphla) telomeres.

Authors:  Julia M Minina; Tatjana V Karamysheva; Nicolaj B Rubtsov; Natalia S Zhdanova
Journal:  Protoplasma       Date:  2018-04-07       Impact factor: 3.356

8.  Genome-wide studies highlight indirect links between human replication origins and gene regulation.

Authors:  Jean-Charles Cadoret; Françoise Meisch; Vahideh Hassan-Zadeh; Isabelle Luyten; Claire Guillet; Laurent Duret; Hadi Quesneville; Marie-Noëlle Prioleau
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-06       Impact factor: 11.205

9.  The temporal program of chromosome replication: genomewide replication in clb5{Delta} Saccharomyces cerevisiae.

Authors:  Heather J McCune; Laura S Danielson; Gina M Alvino; David Collingwood; Jeffrey J Delrow; Walton L Fangman; Bonita J Brewer; M K Raghuraman
Journal:  Genetics       Date:  2008-10-01       Impact factor: 4.562

10.  Molecular analysis of the replication program in unicellular model organisms.

Authors:  M K Raghuraman; Bonita J Brewer
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

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