Literature DB >> 20012185

Molecular analysis of the replication program in unicellular model organisms.

M K Raghuraman1, Bonita J Brewer.   

Abstract

Eukaryotes have long been reported to show temporal programs of replication, different portions of the genome being replicated at different times in S phase, with the added possibility of developmentally regulated changes in this pattern depending on species and cell type. Unicellular model organisms, primarily the budding yeast Saccharomyces cerevisiae, have been central to our current understanding of the mechanisms underlying the regulation of replication origins and the temporal program of replication in particular. But what exactly is a temporal program of replication, and how might it arise? In this article, we explore this question, drawing again on the wealth of experimental information in unicellular model organisms.

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Year:  2010        PMID: 20012185      PMCID: PMC3976475          DOI: 10.1007/s10577-009-9099-x

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  93 in total

1.  The timing of XIST replication: dominance of the domain.

Authors:  S M Gartler; L Goldstein; S E Tyler-Freer; R S Hansen
Journal:  Hum Mol Genet       Date:  1999-06       Impact factor: 6.150

2.  Autonomous DNA replication in human cells is affected by the size and the source of the DNA.

Authors:  S S Heinzel; P J Krysan; C T Tran; M P Calos
Journal:  Mol Cell Biol       Date:  1991-04       Impact factor: 4.272

3.  DNA replication timing of the human beta-globin domain is controlled by histone modification at the origin.

Authors:  Alon Goren; Amalia Tabib; Merav Hecht; Howard Cedar
Journal:  Genes Dev       Date:  2008-04-28       Impact factor: 11.361

4.  Replication structure of the human beta-globin gene domain.

Authors:  D Kitsberg; S Selig; I Keshet; H Cedar
Journal:  Nature       Date:  1993-12-09       Impact factor: 49.962

5.  Analysis of replication intermediates by two-dimensional agarose gel electrophoresis.

Authors:  K L Friedman; B J Brewer
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

Review 6.  The structure and function of yeast ARS elements.

Authors:  C S Newlon; J F Theis
Journal:  Curr Opin Genet Dev       Date:  1993-10       Impact factor: 5.578

7.  Time of replication of yeast centromeres and telomeres.

Authors:  R M McCarroll; W L Fangman
Journal:  Cell       Date:  1988-08-12       Impact factor: 41.582

8.  Structural changes in Mcm5 protein bypass Cdc7-Dbf4 function and reduce replication origin efficiency in Saccharomyces cerevisiae.

Authors:  Margaret L Hoang; Ronald P Leon; Luis Pessoa-Brandao; Sonia Hunt; M K Raghuraman; Walton L Fangman; Bonita J Brewer; Robert A Sclafani
Journal:  Mol Cell Biol       Date:  2007-08-27       Impact factor: 4.272

9.  Regulation of DNA-replication origins during cell-cycle progression.

Authors:  K Shirahige; Y Hori; K Shiraishi; M Yamashita; K Takahashi; C Obuse; T Tsurimoto; H Yoshikawa
Journal:  Nature       Date:  1998-10-08       Impact factor: 49.962

10.  Identification of the sequences required for chromosomal replicator function in Kluyveromyces lactis.

Authors:  Carmela Irene; Clelia Maciariello; Francesco Cioci; Giorgio Camilloni; Carol S Newlon; Lucia Fabiani
Journal:  Mol Microbiol       Date:  2004-03       Impact factor: 3.501

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  19 in total

1.  Genome-scale analysis of replication timing: from bench to bioinformatics.

Authors:  Tyrone Ryba; Dana Battaglia; Benjamin D Pope; Ichiro Hiratani; David M Gilbert
Journal:  Nat Protoc       Date:  2011-06-02       Impact factor: 13.491

2.  Chromosomal context and replication properties of ARS plasmids in Schizosaccharomyces pombe.

Authors:  Aditya S Pratihar; Vishnu P Tripathi; Mukesh P Yadav; Dharani D Dubey
Journal:  J Biosci       Date:  2015-12       Impact factor: 1.826

3.  Analysis of replication profiles reveals key role of RFC-Ctf18 in yeast replication stress response.

Authors:  Laure Crabbé; Aubin Thomas; Véronique Pantesco; John De Vos; Philippe Pasero; Armelle Lengronne
Journal:  Nat Struct Mol Biol       Date:  2010-10-24       Impact factor: 15.369

Review 4.  Initiation of DNA replication: functional and evolutionary aspects.

Authors:  John A Bryant; Stephen J Aves
Journal:  Ann Bot       Date:  2011-04-20       Impact factor: 4.357

Review 5.  Evaluating genome-scale approaches to eukaryotic DNA replication.

Authors:  David M Gilbert
Journal:  Nat Rev Genet       Date:  2010-09-01       Impact factor: 53.242

Review 6.  DNA replication timing.

Authors:  Nicholas Rhind; David M Gilbert
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-08-01       Impact factor: 10.005

Review 7.  Replication timing and its emergence from stochastic processes.

Authors:  John Bechhoefer; Nicholas Rhind
Journal:  Trends Genet       Date:  2012-04-18       Impact factor: 11.639

8.  Mathematical modeling of genome replication.

Authors:  Renata Retkute; Conrad A Nieduszynski; Alessandro de Moura
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-09-17

9.  Replication origins and timing of temporal replication in budding yeast: how to solve the conundrum?

Authors:  Matteo Barberis; Thomas W Spiesser; Edda Klipp
Journal:  Curr Genomics       Date:  2010-05       Impact factor: 2.236

Review 10.  Principles of chromosomal organization: lessons from yeast.

Authors:  Christophe Zimmer; Emmanuelle Fabre
Journal:  J Cell Biol       Date:  2011-03-07       Impact factor: 10.539

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