Literature DB >> 17123958

The effects of cosolutes on protein dynamics: the reversal of denaturant-induced protein fluctuations by trimethylamine N-oxide.

Vicky Doan-Nguyen1, J Patrick Loria.   

Abstract

The protein stabilizing effects of the small molecule osmolyte, trimethylamine N-oxide, against chemical denaturant was investigated by NMR spin-relaxation measurements and model-free analysis. In the presence of 0.7 M guanidine hydrochloride increased picosecond-nanosecond dynamics are observed in the protein ribonuclease A. These increased fluctuations occur throughout the protein, but the most significant increases in flexibility occur at positions believed to be the first to unfold. Addition of 0.35 M trimethylamine N-oxide to this destabilized form of ribonuclease results in significant rigidification of the protein backbone as assessed by (1)H-(15)N order parameters. Statistically, these order parameters are the same as those measured in native ribonuclease indicating that TMAO reduces the amplitude of backbone fluctuations in a destabilized protein. These data suggest that TMAO restricts the bond vector motions on the protein energy landscape to resemble those motions that occur in the native protein and points to a relation between stability and dynamics in this enzyme.

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Year:  2006        PMID: 17123958      PMCID: PMC2222840          DOI: 10.1110/ps.062393707

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  50 in total

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5.  Calorimetrically-derived parameters for protein interactions with urea and guanidine-HCl are not consistent with denaturant m values.

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7.  A naturally occurring protective system in urea-rich cells: mechanism of osmolyte protection of proteins against urea denaturation.

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Journal:  Biochemistry       Date:  1997-07-29       Impact factor: 3.162

8.  Microscopic stability of cold shock protein A examined by NMR native state hydrogen exchange as a function of urea and trimethylamine N-oxide.

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Authors:  G Hernandez; F E Jenney; M W Adams; D M LeMaster
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

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  14 in total

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3.  Thermodynamic and Structural Adaptation Differences between the Mesophilic and Psychrophilic Lactate Dehydrogenases.

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4.  Forced folding of a disordered protein accesses an alternative folding landscape.

Authors:  Mahdi Muhammad Moosa; Allan Chris M Ferreon; Ashok A Deniz
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5.  Urea-Dependent Adenylate Kinase Activation following Redistribution of Structural States.

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Journal:  Biophys J       Date:  2016-10-04       Impact factor: 4.033

6.  Counteracting chemical chaperone effects on the single-molecule α-synuclein structural landscape.

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7.  Counteraction of urea by trimethylamine N-oxide is due to direct interaction.

Authors:  Filip Meersman; Daniel Bowron; Alan K Soper; Michel H J Koch
Journal:  Biophys J       Date:  2009-11-04       Impact factor: 4.033

8.  Quantitative characterization of the compensating effects of trimethylamine-N-oxide and guanidine hydrochloride on the dissociation of human cyanmethmoglobin.

Authors:  Di Wu; Allen P Minton
Journal:  J Phys Chem B       Date:  2013-08-01       Impact factor: 2.991

9.  Solution NMR and CD spectroscopy of an intrinsically disordered, peripheral membrane protein: evaluation of aqueous and membrane-mimetic solvent conditions for studying the conformational adaptability of the 18.5 kDa isoform of myelin basic protein (MBP).

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10.  Helix stabilization precedes aqueous and bilayer-catalyzed fiber formation in islet amyloid polypeptide.

Authors:  Jessica A Williamson; J Patrick Loria; Andrew D Miranker
Journal:  J Mol Biol       Date:  2009-07-30       Impact factor: 5.469

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