Literature DB >> 25345588

Forced folding of a disordered protein accesses an alternative folding landscape.

Mahdi Muhammad Moosa1, Allan Chris M Ferreon, Ashok A Deniz.   

Abstract

Intrinsically disordered proteins (IDPs) are involved in diverse cellular functions. Many IDPs can interact with multiple binding partners, resulting in their folding into alternative ligand-specific functional structures. For such multi-structural IDPs, a key question is whether these multiple structures are fully encoded in the protein sequence, as is the case in many globular proteins. To answer this question, here we employed a combination of single-molecule and ensemble techniques to compare ligand-induced and osmolyte-forced folding of α-synuclein. Our results reveal context-dependent modulation of the protein's folding landscape, suggesting that the codes for the protein's native folds are partially encoded in its primary sequence, and are completed only upon interaction with binding partners. Our findings suggest a critical role for cellular interactions in expanding the repertoire of folds and functions available to disordered proteins.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  biophysics; intrinsically disordered proteins; protein folding; protein-ligand interactions; single-molecule FRET

Mesh:

Substances:

Year:  2014        PMID: 25345588      PMCID: PMC4286261          DOI: 10.1002/cphc.201402661

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  38 in total

1.  Evidence for a partially folded intermediate in alpha-synuclein fibril formation.

Authors:  V N Uversky; J Li; A L Fink
Journal:  J Biol Chem       Date:  2001-01-10       Impact factor: 5.157

Review 2.  Coupling of folding and binding for unstructured proteins.

Authors:  H Jane Dyson; Peter E Wright
Journal:  Curr Opin Struct Biol       Date:  2002-02       Impact factor: 6.809

Review 3.  Protein stabilization by naturally occurring osmolytes.

Authors:  D W Bolen
Journal:  Methods Mol Biol       Date:  2001

4.  Mice lacking alpha-synuclein display functional deficits in the nigrostriatal dopamine system.

Authors:  A Abeliovich; Y Schmitz; I Fariñas; D Choi-Lundberg; W H Ho; P E Castillo; N Shinsky; J M Verdugo; M Armanini; A Ryan; M Hynes; H Phillips; D Sulzer; A Rosenthal
Journal:  Neuron       Date:  2000-01       Impact factor: 17.173

5.  The molecular mechanism of stabilization of proteins by TMAO and its ability to counteract the effects of urea.

Authors:  Qin Zou; Brian J Bennion; Valerie Daggett; Kenneth P Murphy
Journal:  J Am Chem Soc       Date:  2002-02-20       Impact factor: 15.419

6.  Trimethylamine-N-oxide-induced folding of alpha-synuclein.

Authors:  V N Uversky; J Li; A L Fink
Journal:  FEBS Lett       Date:  2001-11-30       Impact factor: 4.124

7.  Linked folding and anion binding of the Bacillus subtilis ribonuclease P protein.

Authors:  C H Henkels; J C Kurz; C A Fierke; T G Oas
Journal:  Biochemistry       Date:  2001-03-06       Impact factor: 3.162

8.  Subcellular localization of wild-type and Parkinson's disease-associated mutant alpha -synuclein in human and transgenic mouse brain.

Authors:  P J Kahle; M Neumann; L Ozmen; V Muller; H Jacobsen; A Schindzielorz; M Okochi; U Leimer; H van Der Putten; A Probst; E Kremmer; H A Kretzschmar; C Haass
Journal:  J Neurosci       Date:  2000-09-01       Impact factor: 6.167

9.  Prediction and functional analysis of native disorder in proteins from the three kingdoms of life.

Authors:  J J Ward; J S Sodhi; L J McGuffin; B F Buxton; D T Jones
Journal:  J Mol Biol       Date:  2004-03-26       Impact factor: 5.469

10.  Measuring the stability of partly folded proteins using TMAO.

Authors:  Cecilia C Mello; Doug Barrick
Journal:  Protein Sci       Date:  2003-07       Impact factor: 6.725

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  12 in total

1.  Site-Specific Fluorescence Polarization for Studying the Disaggregation of α-Synuclein Fibrils by Small Molecules.

Authors:  Conor M Haney; Christina L Cleveland; Rebecca F Wissner; Lily Owei; Jaclyn Robustelli; Malcolm J Daniels; Merve Canyurt; Priscilla Rodriguez; Harry Ischiropoulos; Tobias Baumgart; E James Petersson
Journal:  Biochemistry       Date:  2016-11-11       Impact factor: 3.162

2.  Using a FRET Library with Multiple Probe Pairs To Drive Monte Carlo Simulations of α-Synuclein.

Authors:  John J Ferrie; Conor M Haney; Jimin Yoon; Buyan Pan; Yi-Chih Lin; Zahra Fakhraai; Elizabeth Rhoades; Abhinav Nath; E James Petersson
Journal:  Biophys J       Date:  2018-01-09       Impact factor: 4.033

3.  A Chemical Chaperone Decouples TDP-43 Disordered Domain Phase Separation from Fibrillation.

Authors:  Kyoung-Jae Choi; Phoebe S Tsoi; Mahdi Muhammad Moosa; Adriana Paulucci-Holthauzen; Shih-Chu Jeff Liao; Josephine C Ferreon; Allan Chris M Ferreon
Journal:  Biochemistry       Date:  2018-12-10       Impact factor: 3.162

4.  Folding propensity of intrinsically disordered proteins by osmotic stress.

Authors:  Amanda L Mansouri; Laura N Grese; Erica L Rowe; James C Pino; S Chakra Chennubhotla; Arvind Ramanathan; Hugh M O'Neill; Valerie Berthelier; Christopher B Stanley
Journal:  Mol Biosyst       Date:  2016-11-15

5.  The structural heterogeneity of α-synuclein is governed by several distinct subpopulations with interconversion times slower than milliseconds.

Authors:  Jiaxing Chen; Sofia Zaer; Paz Drori; Joanna Zamel; Khalil Joron; Nir Kalisman; Eitan Lerner; Nikolay V Dokholyan
Journal:  Structure       Date:  2021-05-19       Impact factor: 5.871

6.  Similar Yet Different-Structural and Functional Diversity among Arabidopsis thaliana LEA_4 Proteins.

Authors:  Patrick Knox-Brown; Tobias Rindfleisch; Anne Günther; Kim Balow; Anne Bremer; Dirk Walther; Markus S Miettinen; Dirk K Hincha; Anja Thalhammer
Journal:  Int J Mol Sci       Date:  2020-04-17       Impact factor: 5.923

7.  Early stages of aggregation of engineered α-synuclein monomers and oligomers in solution.

Authors:  Xi Li; Chunhua Dong; Marion Hoffmann; Craig R Garen; Leonardo M Cortez; Nils O Petersen; Michael T Woodside
Journal:  Sci Rep       Date:  2019-02-11       Impact factor: 4.379

Review 8.  Single Molecule FRET: A Powerful Tool to Study Intrinsically Disordered Proteins.

Authors:  Sharonda J LeBlanc; Prakash Kulkarni; Keith R Weninger
Journal:  Biomolecules       Date:  2018-11-08

9.  Direct Single-Molecule Observation of Sequential DNA Bending Transitions by the Sox2 HMG Box.

Authors:  Mahdi Muhammad Moosa; Phoebe S Tsoi; Kyoung-Jae Choi; Allan Chris M Ferreon; Josephine C Ferreon
Journal:  Int J Mol Sci       Date:  2018-12-04       Impact factor: 5.923

Review 10.  When fast is better: protein folding fundamentals and mechanisms from ultrafast approaches.

Authors:  Victor Muñoz; Michele Cerminara
Journal:  Biochem J       Date:  2016-09-01       Impact factor: 3.857

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