Literature DB >> 9204557

Rotational diffusion anisotropy of proteins from simultaneous analysis of 15N and 13C alpha nuclear spin relaxation.

L K Lee1, M Rance, W J Chazin, A G Palmer.   

Abstract

Current methods of determining the rotational diffusion tensors of proteins in solution by NMR spectroscopy exclusively utilize relaxation rate constants for backbone amide 15N spins. However, the distributions of orientations of N-H bond vectors are not isotropic in many proteins, and correlations between bond vector orientations reduce the accuracy and precision of rotational diffusion tensors extracted from 15N spin relaxation data. The inclusion of both 13C alpha and 15N spin relaxation rate constants increases the robustness of the diffusion tensor analysis because the orientations of the C alpha-H alpha bond vectors differ from the orientations of the N-H bond vectors. Theoretical and experimental results for calbindin D9k, granulocyte colony stimulating factor, and ubiquitin, three proteins with different distributions of N-H and C alpha-H alpha bond vectors, are used to illustrate the advantages of the simultaneous utilization of 13C alpha and 15N relaxation data.

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Year:  1997        PMID: 9204557     DOI: 10.1023/a:1018631009583

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  17 in total

1.  Backbone dynamics of calcium-loaded calbindin D9k studied by two-dimensional proton-detected 15N NMR spectroscopy.

Authors:  J Kördel; N J Skelton; M Akke; A G Palmer; W J Chazin
Journal:  Biochemistry       Date:  1992-05-26       Impact factor: 3.162

2.  The structure of granulocyte-colony-stimulating factor and its relationship to other growth factors.

Authors:  C P Hill; T D Osslund; D Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  1993-06-01       Impact factor: 11.205

3.  Structure of ubiquitin refined at 1.8 A resolution.

Authors:  S Vijay-Kumar; C E Bugg; W J Cook
Journal:  J Mol Biol       Date:  1987-04-05       Impact factor: 5.469

4.  High-resolution structure of calcium-loaded calbindin D9k.

Authors:  J Kördel; N J Skelton; M Akke; W J Chazin
Journal:  J Mol Biol       Date:  1993-06-05       Impact factor: 5.469

5.  A test of the model-free formulas. Effects of anisotropic rotational diffusion and dimerization.

Authors:  J M Schurr; H P Babcock; B S Fujimoto
Journal:  J Magn Reson B       Date:  1994-11

6.  Backbone dynamics of calmodulin studied by 15N relaxation using inverse detected two-dimensional NMR spectroscopy: the central helix is flexible.

Authors:  G Barbato; M Ikura; L E Kay; R W Pastor; A Bax
Journal:  Biochemistry       Date:  1992-06-16       Impact factor: 3.162

7.  Proline cis-trans isomers in calbindin D9k observed by X-ray crystallography.

Authors:  L A Svensson; E Thulin; S Forsén
Journal:  J Mol Biol       Date:  1992-02-05       Impact factor: 5.469

8.  Spectral density function mapping using 15N relaxation data exclusively.

Authors:  N A Farrow; O Zhang; A Szabo; D A Torchia; L E Kay
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

9.  Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease.

Authors:  L E Kay; D A Torchia; A Bax
Journal:  Biochemistry       Date:  1989-11-14       Impact factor: 3.162

10.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

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  109 in total

1.  Separating the contributions to 15N transverse relaxation in a fibronectin type III domain.

Authors:  A E Meekhof; S M Freund
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

2.  A graphical method for the analysis of anisotropic rotational diffusion in proteins.

Authors:  O Millet; M Pons
Journal:  J Biomol NMR       Date:  2001-02       Impact factor: 2.835

3.  Efficient analysis of macromolecular rotational diffusion from heteronuclear relaxation data.

Authors:  P Dosset; J C Hus; M Blackledge; D Marion
Journal:  J Biomol NMR       Date:  2000-01       Impact factor: 2.835

4.  The structure and dynamics in solution of Cu(I) pseudoazurin from Paracoccus pantotrophus.

Authors:  G S Thompson; Y C Leung; S J Ferguson; S E Radford; C Redfield
Journal:  Protein Sci       Date:  2000-05       Impact factor: 6.725

5.  Assessing potential bias in the determination of rotational correlation times of proteins by NMR relaxation.

Authors:  A L Lee; A J Wand
Journal:  J Biomol NMR       Date:  1999-02       Impact factor: 2.835

6.  Microsecond time scale dynamics in the RXR DNA-binding domain from a combination of spin-echo and off-resonance rotating frame relaxation measurements.

Authors:  F A Mulder; P J van Tilborg; R Kaptein; R Boelens
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

7.  A dynamically tuned double-stranded RNA binding mechanism for the activation of antiviral kinase PKR.

Authors:  S Nanduri; F Rahman; B R Williams; J Qin
Journal:  EMBO J       Date:  2000-10-16       Impact factor: 11.598

8.  Lipari-Szabo mapping: A graphical approach to Lipari-Szabo analysis of NMR relaxation data using reduced spectral density mapping.

Authors:  M Andrec; G T Montelione; R M Levy
Journal:  J Biomol NMR       Date:  2000-10       Impact factor: 2.835

9.  Key interactions in the immunoglobulin-like structure of apo-neocarzinostatin: evidence from nuclear magnetic resonance relaxation data and molecular dynamics simulations.

Authors:  N Izadi-Pruneyre; Y Blouquit; J Perez; P Minard; M Desmadril; J Mispelter
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

10.  Comparison of (13)C(alpha)H and (15)NH backbone dynamics in protein GB1.

Authors:  Djaudat Idiyatullin; Irina Nesmelova; Vladimir A Daragan; Kevin H Mayo
Journal:  Protein Sci       Date:  2003-05       Impact factor: 6.725

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