Literature DB >> 17116864

Effect of urea on the structural dynamics of water.

Y L A Rezus1, H J Bakker.   

Abstract

We use polarization-resolved mid-infrared pump-probe spectroscopy to study the effect of urea on the structure and dynamics of water. Surprisingly, we find that, even at high concentrations of urea (8 M), the orientational dynamics of most water molecules are the same as in pure liquid water, showing that urea has a negligible effect on the hydrogen-bond dynamics of these molecules. However, a small fraction of the water molecules (approximately one water molecule per urea molecule) turns out to be strongly immobilized by urea, displaying orientational dynamics that are more than six times slower than in bulk water. A likely explanation is that these water molecules are tightly associated with urea, forming specific urea-water complexes. We discuss these results in light of the protein denaturing ability of aqueous urea.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 17116864      PMCID: PMC1693679          DOI: 10.1073/pnas.0606538103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  6 in total

1.  The thermodynamics of urea solutions and the heat of formation of the peptide hydrogen bond.

Authors:  J A SCHELLMAN
Journal:  C R Trav Lab Carlsberg Chim       Date:  1955

2.  On the orientational relaxation of HDO in liquid water.

Authors:  Y L A Rezus; H J Bakker
Journal:  J Chem Phys       Date:  2005-09-15       Impact factor: 3.488

Review 3.  Molecular structure and dynamics of liquids: aqueous urea solutions.

Authors:  A Idrissi
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2005-01-01       Impact factor: 4.098

4.  Testing the core/shell model of nanoconfined water in reverse micelles using linear and nonlinear IR spectroscopy.

Authors:  Ivan R Piletic; David E Moilanen; D B Spry; Nancy E Levinger; M D Fayer
Journal:  J Phys Chem A       Date:  2006-04-20       Impact factor: 2.781

5.  Impact of urea on water structure: a clue to its properties as a denaturant?

Authors:  A K Soper; E W Castner; Alenka Luzar
Journal:  Biophys Chem       Date:  2003-09       Impact factor: 2.352

6.  Watching Hydrogen Bonds Break: A Transient Absorption Study of Water.

Authors:  Tobias Steinel; John B Asbury; Junrong Zheng; M D Fayer
Journal:  J Phys Chem A       Date:  2004-12-16       Impact factor: 2.781

  6 in total
  21 in total

1.  Urea orientation at protein surfaces.

Authors:  Xin Chen; Laura B Sagle; Paul S Cremer
Journal:  J Am Chem Soc       Date:  2007-11-15       Impact factor: 15.419

2.  Denaturant-specific effects on the structural energetics of a protein-denatured ensemble.

Authors:  Mahdi Muhammad Moosa; Asha Z Goodman; Josephine C Ferreon; Chul Won Lee; Allan Chris M Ferreon; Ashok A Deniz
Journal:  Eur Biophys J       Date:  2017-10-27       Impact factor: 1.733

3.  Differential scanning calorimetry and fluorescence study of lactoperoxidase as a function of guanidinium-HCl, urea, and pH.

Authors:  Bogumil Zelent; Kim A Sharp; Jane M Vanderkooi
Journal:  Biochim Biophys Acta       Date:  2010-03-16

4.  Toward an atomistic description of the urea-denatured state of proteins.

Authors:  Michela Candotti; Santiago Esteban-Martín; Xavier Salvatella; Modesto Orozco
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-27       Impact factor: 11.205

5.  Solute's perspective on how trimethylamine oxide, urea, and guanidine hydrochloride affect water's hydrogen bonding ability.

Authors:  Ileana M Pazos; Feng Gai
Journal:  J Phys Chem B       Date:  2012-10-09       Impact factor: 2.991

6.  Infrared and Fluorescence Assessment of Protein Dynamics: From Folding to Function.

Authors:  Bei Ding; Mary Rose Hilaire; Feng Gai
Journal:  J Phys Chem B       Date:  2016-05-25       Impact factor: 2.991

7.  Water in the half shell: structure of water, focusing on angular structure and solvation.

Authors:  Kim A Sharp; Jane M Vanderkooi
Journal:  Acc Chem Res       Date:  2010-02-16       Impact factor: 22.384

8.  Preferential interactions of guanidinum ions with aromatic groups over aliphatic groups.

Authors:  Philip E Mason; Christopher E Dempsey; George W Neilson; Steve R Kline; John W Brady
Journal:  J Am Chem Soc       Date:  2009-11-25       Impact factor: 15.419

9.  Urea and guanidinium chloride denature protein L in different ways in molecular dynamics simulations.

Authors:  C Camilloni; A Guerini Rocco; I Eberini; E Gianazza; R A Broglia; G Tiana
Journal:  Biophys J       Date:  2008-03-13       Impact factor: 4.033

10.  Changes in water structure induced by the guanidinium cation and implications for protein denaturation.

Authors:  J Nathan Scott; Nathaniel V Nucci; Jane M Vanderkooi
Journal:  J Phys Chem A       Date:  2008-10-08       Impact factor: 2.781

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.