Literature DB >> 14499925

Impact of urea on water structure: a clue to its properties as a denaturant?

A K Soper1, E W Castner, Alenka Luzar.   

Abstract

A new investigation of the structure of urea-water solutions at a mole ratio of 1 urea to 4 water molecules is described. Neutron diffraction is used in conjunction with isotope labelling on the water and urea hydrogen atoms and on the nitrogen atom of urea. The diffraction data are analysed using the empirical potential structure refinement procedure to yield a set of site-site radial distribution functions and spatial density functions that are consistent with the diffraction data. The results are discussed in relation to recent and past X-ray and neutron diffraction experiments and theoretical studies of this system. It is found that urea incorporates readily into water, forming pronounced hydrogen bonds with water at both the amine and carbonyl headgroups. In addition the urea also hydrogen bonds to itself, forming chains or clusters consisting of up to approximately 60 urea molecules in a cluster. There, is however, little or no evidence of urea segregating itself from water, in marked contrast to a recent study of the methanol-water system. This behaviour is discussed in the context of the great propensity of urea to effect protein denaturation.

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Year:  2003        PMID: 14499925     DOI: 10.1016/s0301-4622(03)00095-4

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  25 in total

1.  Protein folding, stability, and solvation structure in osmolyte solutions.

Authors:  Jörg Rösgen; B Montgomery Pettitt; David Wayne Bolen
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

2.  Effect of urea on the structural dynamics of water.

Authors:  Y L A Rezus; H J Bakker
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-20       Impact factor: 11.205

3.  The free energy of dissociation of oligomeric structure in phycocyanin is not linear with denaturant.

Authors:  Katie L Thoren; Katelyn B Connell; Taylor E Robinson; David D Shellhamer; Margaret S Tammaro; Yvonne M Gindt
Journal:  Biochemistry       Date:  2006-10-03       Impact factor: 3.162

4.  Protein denaturation by urea: slash and bond.

Authors:  Peter J Rossky
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-30       Impact factor: 11.205

Review 5.  Proteins in binary solvents.

Authors:  Francesco Spinozzi; Paolo Mariani; Maria Grazia Ortore
Journal:  Biophys Rev       Date:  2016-03-18

6.  Toward an atomistic description of the urea-denatured state of proteins.

Authors:  Michela Candotti; Santiago Esteban-Martín; Xavier Salvatella; Modesto Orozco
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-27       Impact factor: 11.205

7.  Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding.

Authors:  Lan Hua; Ruhong Zhou; D Thirumalai; B J Berne
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-28       Impact factor: 11.205

8.  Osmolyte-induced perturbations of hydrogen bonding between hydration layer waters: correlation with protein conformational changes.

Authors:  Feng Guo; Joel M Friedman
Journal:  J Phys Chem B       Date:  2009-12-31       Impact factor: 2.991

9.  Counteraction of urea by trimethylamine N-oxide is due to direct interaction.

Authors:  Filip Meersman; Daniel Bowron; Alan K Soper; Michel H J Koch
Journal:  Biophys J       Date:  2009-11-04       Impact factor: 4.033

10.  Water in the half shell: structure of water, focusing on angular structure and solvation.

Authors:  Kim A Sharp; Jane M Vanderkooi
Journal:  Acc Chem Res       Date:  2010-02-16       Impact factor: 22.384

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