Literature DB >> 17101277

Searching for silver bullets: an alternative strategy for crystallizing macromolecules.

Alexander McPherson1, Bob Cudney.   

Abstract

Based on a hypothesis that various small molecules might establish stabilizing, intermolecular, non covalent crosslinks in protein crystals and thereby promote lattice formation, we carried out three separate experiments. We assessed the impact of 200 chemicals on the propensity of 81 different proteins and viruses to crystallize. The experiments were comprised of 18240 vapor diffusion trials. A salient feature of the experiments was that, aside from the inclusion of the reagent mixes, only two fundamental crystallization conditions were used, 30% PEG 3350, and 50% Tacsimate at pH 7. Overall, 65 proteins (85%) were crystallized. Most significant was that 35 of the 65 (54%) crystallized only in the presence of one or more reagent mixes, but not in control samples lacking any additives. Among the most promising types of reagent mixes were those composed of polyvalent, charged groups, such as di and tri carboxylic acids, diamino compounds, molecules bearing one or more sulfonyl or phosphate groups, and a broad range of common biochemicals, coenzymes, biological effectors, and ligands. We propose that an alternate approach to crystallizing proteins might be developed, which employs a limited set of fundamental crystallization conditions combined with a broad screen of potentially useful small molecule additives.

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Year:  2006        PMID: 17101277     DOI: 10.1016/j.jsb.2006.09.006

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  64 in total

1.  Structural homology between the C-terminal domain of the PapC usher and its plug.

Authors:  Bradley Ford; Ana Toste Rêgo; Timothy J Ragan; Jerome Pinkner; Karen Dodson; Paul C Driscoll; Scott Hultgren; Gabriel Waksman
Journal:  J Bacteriol       Date:  2010-01-29       Impact factor: 3.490

2.  Amino acids and glycine ethyl ester as new crystallization reagents for lysozyme.

Authors:  Len Ito; Kentaro Shiraki; Hiroshi Yamaguchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-05-27

3.  Comparative analysis of amino acids and amino-acid derivatives in protein crystallization.

Authors:  Len Ito; Kentaro Shiraki; Hiroshi Yamaguchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-05-27

4.  Lessons from high-throughput protein crystallization screening: 10 years of practical experience.

Authors:  Joseph R Luft; Edward H Snell; George T Detitta
Journal:  Expert Opin Drug Discov       Date:  2011-03-22       Impact factor: 6.098

5.  Development of an alternative approach to protein crystallization.

Authors:  Alexander McPherson; Chieniang Nguyen; Steven B Larson; John S Day; Bob Cudney
Journal:  J Struct Funct Genomics       Date:  2007-11-24

6.  FASTDXL: a generalized screen to trap disulfide-stabilized complexes for use in structural studies.

Authors:  Jacob E Corn; James M Berger
Journal:  Structure       Date:  2007-07       Impact factor: 5.006

7.  Phoenito experiments: combining the strengths of commercial crystallization automation.

Authors:  Janet Newman; Tam M Pham; Thomas S Peat
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-10-31

8.  A new crystal form of bovine pancreatic RNase A in complex with 2'-deoxyguanosine-5'-monophosphate.

Authors:  Steven B Larson; John S Day; Robert Cudney; Alexander McPherson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-08-31

9.  Crystal structure of an Fe-S cluster-containing fumarate hydratase enzyme from Leishmania major reveals a unique protein fold.

Authors:  Patricia R Feliciano; Catherine L Drennan; M Cristina Nonato
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-15       Impact factor: 11.205

10.  Several structural motifs cooperate in determining the highly effective anti-thrombin activity of NU172 aptamer.

Authors:  Romualdo Troisi; Valeria Napolitano; Vera Spiridonova; Irene Russo Krauss; Filomena Sica
Journal:  Nucleic Acids Res       Date:  2018-12-14       Impact factor: 16.971

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